Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 967 / 0 ARO2 armadillo repeat only 2 (.1) AT4G34940 925 / 0 ARO1 armadillo repeat only 1 (.1) AT4G36030 804 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 382 / 1e-124 ARO4 armadillo repeat only 4 (.1) AT1G77460 45 / 0.0002 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT4G12710 43 / 0.0007 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 957 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 931 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.015G082800 [exp] 394 / 4e-129 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 388 / 8e-127 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.002G009900 [exp] 48 / 2e-05 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.006G015100 [exp] 44 / 0.0005 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.008G214100 [exp] 43 / 0.0007 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 43 / 0.0008 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.014G158700 [exp] 42 / 0.001 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041905 [exp] 1008 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 1001 / 0 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10025059 [exp] 907 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10027837 [exp] 501 / 4e-173 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10037086 [exp] 368 / 4e-123 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10027838 [exp] 362 / 9e-122 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10026695 [exp] 373 / 1e-120 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10004620 [exp] 372 / 3e-120 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10036897 [exp] 264 / 2e-80 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 222 / 2e-68 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.005G113000.1 pacid=42804185 polypeptide=Potri.005G113000.1.p locus=Potri.005G113000 ID=Potri.005G113000.1.v4.1 annot-version=v4.1 ATGGCGGACTTAGTGAAGCAAATCTTGGCAAAACCAATCCAGTTAGCTGACCAAGTGATCAAAGTCGCTGACGAGGCTAGTTCTTTTAAGCAAGAATGTG GAGAACTCAAATCCAAGACTGAAAAATTAGCAACCCTTCTTCGTCAAGCAGCAAGAGCTAGTTCTGATCTCTATGAGCGACCCGCACGCAGAATCATAGA GGATACTGAACAAGTTCTGGACAAGGCCTTGATTCTCGTTATCAAATGCCGAGCGAATGGACTGATGAAACGTGTTTTTACTATCATTCCTGCGGCTGCT TTTCGGAAAATGGGCTCTCAGTTGGAGAATTCTATTGGAGATGTGTCTTGGCTGTTGCGTGTGTCTGCATCAGCTGATGATCGTGATGATGAGTACTTGG GGCTCCCTCCTATTGCTGCAAATGAGCCAATTTTGTGTTTGATATGGGAGCAGATTGCAATTCTTTATACTGGGTCTGTTGATGATAGATCTGATGCTGC TGCTTCCCTTGTTTCGCTTGCTAGAGACAACGATCGGTATGGGAAGTTGATTATTGAAGAGGGTGGAGTTCCTCCTTTGTTGAAGTTGGTGAAAGAAGGG AAATTGGCAGGTCAAGAGAATGCTGCAAGAGCAATTGGGTTGTTGGGTCGTGACCCGGAAAGCGTGGAGCATATGATTGTTGCTGGTGTTTGTTCAGTGT TTGCGAAAATACTCAAAGATGGTCCTATGAAGGTCCAGGTTGTTGTCGCTTGGGCTGTGTCGGAGTTTGCTGCTAATTATCCTAAATGTCAAGATCTTTT TGCTCAGCATAATATAATCCGGTTGCTGGTGAGTCATATTGCGTTCGAGACGGTTCAAGAGCATAGTAAGTATGCTATTGTTAGTAAGGCTACTTCAATC CATGCTCTTGTTATTGCTAGCAATAATTCGAATGTTACTAATGATGTAAATAAGCAAGTAGTTGATGAGGATCAAAGTCGAATTCCTTATCCTACGCGGG ATAAGAGCCCGAATCAATTGCATACTGTGGTCACCAATACTATGGCAATGAATGCTGCGACCAAGCGGCCTCTACAAAAGCCAGGGGCCAATACTAATGG TGCTACTCATGTAAACTTTGCCAAGAGTAATGGTAGCAACAATTTGAAGCAAAATTATCAGCCCCATCATCAGCATAATCATTCAATTTCGGGGGTTAGT GTTAAGGGGAGGGAGCTTGAAGATCCTGCTACGAAGGCCAATATGAAAGCAGTGGCAGCAAGAGCACTTTGGCATCTTGCCAAGGGAAACTCTCCAATTT GCCGTAGCATAACTGAATCTAGAGCGCTCTTGTGTTTTGCGGTGCTATTAGAGAAGGGACCTGAAGATGTTCAATACAATTGTGCCATGGCTTTGATGGA AATCACAGCGGTTGCCGAGAAAGATGCTGATTTGAGAAGATCAGCGTTCAAGCCTAATTCACCGGCTTGCAAAGCTGTTATTGATCAAATGTTGAAGATT ATTGAAAAAGCTGACTCTGAACTCCTCATGCCTTGCATCAGAGCTATTGGGAATTTGGCAAGGACATTTCGAGCAACAGAGACAAGGATGATCTCCCCAT TGGTTAGACTTCTTGACGAGAGAGAAGCAGAGGTCTCTAGGGAGGCTGCAATTGCCCTCGCAAAGTTTGCCGGCAAAGAAAACTACCTCCACCTCGACCA CTCCAAGGCAATTATAAGTGCTGGAGGGGCGAAGCACTTAATCCAGCTTGTTTACTTTGGTGAACTAATTGTTCAGCTCTCAGCATTGCCTCTCCTATGC TATATTGCACTTCATGTCCCGGATAGCGAGGAGCTTGCCCAGGCAGAGGTGCTCACTGTCCTAGAATGGGCATCCAAGCAATCTTACATGGTTCAAGACG AAAAATTGGAAGCATTGTTGCCAGAGGCTAAAAGTAGATTGGAGCTTTATCAATCCAGAGGTTCAAGGGGATTCCATTGA
AA sequence Show only first row Show all	>Potri.005G113000.1 pacid=42804185 polypeptide=Potri.005G113000.1.p locus=Potri.005G113000 ID=Potri.005G113000.1.v4.1 annot-version=v4.1 MADLVKQILAKPIQLADQVIKVADEASSFKQECGELKSKTEKLATLLRQAARASSDLYERPARRIIEDTEQVLDKALILVIKCRANGLMKRVFTIIPAAA FRKMGSQLENSIGDVSWLLRVSASADDRDDEYLGLPPIAANEPILCLIWEQIAILYTGSVDDRSDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLVKEG KLAGQENAARAIGLLGRDPESVEHMIVAGVCSVFAKILKDGPMKVQVVVAWAVSEFAANYPKCQDLFAQHNIIRLLVSHIAFETVQEHSKYAIVSKATSI HALVIASNNSNVTNDVNKQVVDEDQSRIPYPTRDKSPNQLHTVVTNTMAMNAATKRPLQKPGANTNGATHVNFAKSNGSNNLKQNYQPHHQHNHSISGVS VKGRELEDPATKANMKAVAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNCAMALMEITAVAEKDADLRRSAFKPNSPACKAVIDQMLKI IEKADSELLMPCIRAIGNLARTFRATETRMISPLVRLLDEREAEVSREAAIALAKFAGKENYLHLDHSKAIISAGGAKHLIQLVYFGELIVQLSALPLLC YIALHVPDSEELAQAEVLTVLEWASKQSYMVQDEKLEALLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Potri.005G113000 [exp]	0	1
AT1G03370			C2 calcium/lipid-binding and G...		Potri.016G003900 [exp]	2.82	0.8621
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154700 [exp]	10.00	0.8637
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Potri.001G331100 [exp]	17.14	0.8389	CYP94.2
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.014G136200 [exp]	19.13	0.8452	Pt-HPT2.1
AT5G50000			Protein kinase superfamily pro...		Potri.012G079000 [exp]	21.95	0.7622
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	23.06	0.8195	NANN.1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	23.81	0.8334
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	27.44	0.8506
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	28.35	0.8495
AT3G13600			calmodulin-binding family prot...		Potri.001G006200 [exp]	34.69	0.8290

Compare expression of checked genes

Potri.005G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.