Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19860 211 / 5e-67 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 174 / 9e-53 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 84 / 1e-18 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23210 81 / 3e-17 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G14410 79 / 1e-16 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51070 76 / 7e-16 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G47640 72 / 1e-14 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168100 [exp] 255 / 2e-83 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 251 / 3e-82 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G132400 [exp] 92 / 8e-22 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G074400 [exp] 86 / 2e-19 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G031800 [exp] 84 / 7e-19 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G031000 [exp] 84 / 1e-18 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 83 / 2e-18 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G165700 [exp] 79 / 3e-17 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.010G072900 [exp] 77 / 2e-16 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041908 [exp] 236 / 1e-76 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 232 / 7e-75 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 92 / 8e-22 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 92 / 1e-21 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022186 [exp] 84 / 6e-19 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021199 [exp] 80 / 2e-17 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10020069 [exp] 80 / 2e-17 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024233 [exp] 74 / 7e-15 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041148 [exp] 66 / 3e-12 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 64 / 4e-12 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G113400.1 pacid=42804945 polypeptide=Potri.005G113400.1.p locus=Potri.005G113400 ID=Potri.005G113400.1.v4.1 annot-version=v4.1 ATGGATCAATGGAACACAAGAAATGACTACGCTCAATCTTTCGTTGCTGCAACAACCAATATGGTTCCTTCAAATTCACTTCATTCATTCCCACCTCGCT CTTCTACTCGTCTTCAGAACTCAGCTCTTGAACCCAGGCAGAGGCAAGAAGTGGAAGTGAAAAATCCAATTGCTGTTGCAAAAAAAGTTCAAAAGGCAGA CCGTGAAAAATTGAGGAGGGATAATCTTAATGAGCAGTTTCTTGAATTGGGTACCACACTAGACCCAGATAGGCCAAAGAATGACAAGGCAACCATTTTG ACAGACACAATTCAAGTGCTGAAGGATCTAACAGCTGAAGTGAACAGGCTAAAGGCTGAGTGTGCGACACTCTCAGAAGAAACCCATGAGCTAATGCAGG AAAAAAATGAGCTCAGGGAAGAGAAGGCATCTTTGAAAGCTGATACTGAAAATTTAAATGCCCAGTATCATCAAAGTACAAGGGCTATGTTCCCATGGGC TGCTGTTGATCCTTCTGTTGTAATTCCTCCTTATTCTTATCCGGTTCCTGTACCTGTCCCTCCAGGCCCAATTTCCATGCACCCGTCATTGCAGCCATTT GTCTTCTTTGGAAACCAGAATCCCGGTGCCATTGCTAGTCCTTGTTCAACATTTATTCCATACCCAACTGCAAATCACCCAAATGATCAGCCACCTGCTC AGTATGCTTCTGGTTCCCAATTTTCAAGCAAACAGGATTCCAGAACCAAGTCAACAGATCACGAGGGGGGCAGAAATAAAGAAAGATGCAACGATTCTTC TGATGTTGCAACTGACCTTGAACTTAAAATGCCTGGATCATCAGCACAACAGGATATATCATCTGGAGAAAAGAAAGGCAAGCAATGTCAAAGAAAGGAA AGAATTATCACAAATGTTAGCTCCTCGTGCTCGTCATCTTCAGGGATGCTCCTCTAA
AA sequence Show only first row Show all	>Potri.005G113400.1 pacid=42804945 polypeptide=Potri.005G113400.1.p locus=Potri.005G113400 ID=Potri.005G113400.1.v4.1 annot-version=v4.1 MDQWNTRNDYAQSFVAATTNMVPSNSLHSFPPRSSTRLQNSALEPRQRQEVEVKNPIAVAKKVQKADREKLRRDNLNEQFLELGTTLDPDRPKNDKATIL TDTIQVLKDLTAEVNRLKAECATLSEETHELMQEKNELREEKASLKADTENLNAQYHQSTRAMFPWAAVDPSVVIPPYSYPVPVPVPPGPISMHPSLQPF VFFGNQNPGAIASPCSTFIPYPTANHPNDQPPAQYASGSQFSSKQDSRTKSTDHEGGRNKERCNDSSDVATDLELKMPGSSAQQDISSGEKKGKQCQRKE RIITNVSSSCSSSSGMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	0	1
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	2.44	0.8054
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	3.74	0.8050
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	8.00	0.7915
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	14.49	0.7383
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Potri.010G215200 [exp]	18.97	0.7382
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	22.91	0.7924	TTN8.2
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	24.97	0.7715	Pt-XRN2.2
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	27.27	0.7589
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	27.29	0.7875
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.002G161500 [exp]	27.34	0.7521

Compare expression of checked genes

Potri.005G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.