Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPK18
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66210 870 / 0 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4) AT2G17890 860 / 0 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 819 / 0 CPK18 calcium-dependent protein kinase 18 (.1.2) AT3G50530 444 / 3e-150 CRK CDPK-related kinase (.1.2) AT5G12180 439 / 4e-149 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 437 / 2e-148 CPK34 calcium-dependent protein kinase 34 (.1) AT1G49580 436 / 7e-147 Calcium-dependent protein kinase (CDPK) family protein (.1) AT4G23650 431 / 7e-146 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT1G50700 429 / 2e-145 CPK33 calcium-dependent protein kinase 33 (.1) AT2G41140 430 / 5e-145 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057600 [exp] 959 / 0 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G135900 [exp] 454 / 6e-154 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 450 / 2e-152 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 442 / 2e-149 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 435 / 6e-147 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.009G069200 [exp] 430 / 1e-145 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.010G244800 [exp] 431 / 4e-145 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.012G023300 [exp] 430 / 6e-145 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.001G097400 [exp] 427 / 1e-144 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041914 [exp] 914 / 0 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 908 / 0 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10002966 [exp] 449 / 1e-151 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10017537 [exp] 436 / 7e-149 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10038460 [exp] 432 / 1e-146 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10008875 [exp] 433 / 7e-146 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10008958 [exp] 429 / 9e-146 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10025270 [exp] 428 / 5e-144 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10028862 [exp] 428 / 6e-144 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10032640 [exp] 425 / 7e-144 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.005G113600.1 pacid=42804232 polypeptide=Potri.005G113600.1.p locus=Potri.005G113600 ID=Potri.005G113600.1.v4.1 annot-version=v4.1 ATGGGTGCTTGTTTTTCTACCATCAAAGTTAGTGGTTCTAACAGCAACAACAACGTTATTCACAGCAGAAAAGAACCCACCAAGCCACAAACAAAGACAA CAAAAGCAACAACAGCAACAAGGAAAAAGCAAGAAGTTGTGCATCATCATCAGAATAATAAGAACGTAAACAATGAGGCAGAAAAGAAGCTAAAGGTCAA AGAGAAGCAAAGTAGCAAGGCGATCCCTTGTGGGAAAAGAACAGATTTTGGTTATGATAAAGATTTTGACATGAGATATACAATTGGCAAATTGCTGGGT CATGGTCAATTTGGTTATACATATGTTGCTATTGATAAGGCTAATGGAGATCGAGTTGCTGTCAAGAGAATTGAGAAAAACAAGATGGTTCTTCCTATTG CAGTAGAGGATGTTAAACGGGAGGTCAAGATATTGCGAGAACTCACAGGCCACGAGAACGTAGTTCAGTTTTATAATGCATTAGAGGATGATTCTTATGT ATATATTGTTATGGAGTTATGTGAAGGTGGAGAATTGCTAGATCGGATATTGTCAAAGAAGGACAGTCGTTACACTGAGAAAGATGCAGCAGTAGTTGTG CGACAGATGCTCAAAGTTGCAGCTGAATGTCATTTACATGGCTTGGTGCACCGCGACATGAAGCCTGAGAATTTTCTTTTCAAGTCAACCAAGGGGGACT CACCTCTGAAAGCGACAGATTTTGGTTTGTCTGACTTCATAAAACCAGGCAGGAAGTTTCAAGATATTGTTGGCAGTGCCTACTACGTTGCACCTGAAGT ATTAAAACGCAAGTCTGGACCTGAATCAGATGTCTGGAGTATTGGTGTGATCACATACATTTTGCTATGTGGGAGGCGTCCATTTTGGGATAAGACTGAG GATGGTATATTTAAGGAGGTTTTAAAGAACAAGCCTGATTTTCGCCGTAAACCATGGCCTACCATTAGCACTAGTGCAAAAGATTTTGTGAATAAGTTAC TGGTGAAGGATCCTCGGGCAAGACTTACTGCTGCTCAAGCTCTATCACATCCATGGGTCAGAGAAGGAGGAGTTGCATCTGAGATTCCTATTGACATATC TGTCCTGAGTAACATGCGACAATTTGTGAAGTACAGTCGTTTGAAGCAGTTTGCTCTAAGGGCATTGGCAAGCACGATTGATGAAGAGGAACTAGCTGAT CTTAAGGATCAATTTGATGCCATTGATGTGGATAAAAATGGTGCTATTAGTCTTGAAGAAATGAGACAGGCCCTTGCTAAAGATCTTCCTTGGAAATTGA AAGAATCGCGTGTCTTGGAAATTGTTCAAGCGATTGACAGTAACACAGATGGACTAGTAGATTTCACCGAGTTTGTTGCAGCTGCTCTGCATGTCCATCA GTTGCAGGAACACAACTCTGAGAAGTGGCAGCTGCGGTCACAGGCTGCTTTTGAGAAATTTGATATTGACAGAGACGGATATATAACTCCAGAAGAACTT AGAATGCATACGGGCTTGAGAGGTTCTATTGACCCACTTCTTGAGGAGGCTGACATTGACAAGGATGGTAAAATAAGCCTTTCAGAATTCCGTAGACTTC TAAGAACTGCTAGCATGAGCTCGCGAAATGTGCCAAGCCCATCTGGCCATCGTAAATCTCATAAAATATAG
AA sequence Show only first row Show all	>Potri.005G113600.1 pacid=42804232 polypeptide=Potri.005G113600.1.p locus=Potri.005G113600 ID=Potri.005G113600.1.v4.1 annot-version=v4.1 MGACFSTIKVSGSNSNNNVIHSRKEPTKPQTKTTKATTATRKKQEVVHHHQNNKNVNNEAEKKLKVKEKQSSKAIPCGKRTDFGYDKDFDMRYTIGKLLG HGQFGYTYVAIDKANGDRVAVKRIEKNKMVLPIAVEDVKREVKILRELTGHENVVQFYNALEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAVVV RQMLKVAAECHLHGLVHRDMKPENFLFKSTKGDSPLKATDFGLSDFIKPGRKFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTE DGIFKEVLKNKPDFRRKPWPTISTSAKDFVNKLLVKDPRARLTAAQALSHPWVREGGVASEIPIDISVLSNMRQFVKYSRLKQFALRALASTIDEEELAD LKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEIVQAIDSNTDGLVDFTEFVAAALHVHQLQEHNSEKWQLRSQAAFEKFDIDRDGYITPEEL RMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMSSRNVPSPSGHRKSHKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	0	1	CPK18
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	1.41	0.9507	Pt-MPK3.2
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	2.00	0.9337	CBP60.12
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	2.64	0.8847
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	2.82	0.8795
					Potri.018G078801 [exp]	3.87	0.9073
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	5.19	0.8475
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	5.83	0.8420
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	7.21	0.8479
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	9.16	0.8871
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.001G218800 [exp]	9.79	0.8434

Compare expression of checked genes

Potri.005G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.