Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51240 598 / 0 TT6, F3'H, F3H TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) AT5G24530 208 / 2e-64 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 207 / 4e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 203 / 8e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 201 / 1e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 201 / 3e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 195 / 4e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 189 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 188 / 2e-56 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G78550 181 / 6e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113700 [exp] 707 / 0 AT3G51240 590 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.015G002800 [exp] 221 / 1e-69 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 221 / 4e-69 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 218 / 4e-68 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 216 / 3e-67 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G024100 [exp] 211 / 4e-65 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.006G101100 [exp] 207 / 7e-64 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 206 / 2e-63 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 206 / 3e-63 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041912 [exp] 592 / 0 AT3G51240 603 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Lus10041913 [exp] 580 / 0 AT3G51240 602 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Lus10032930 [exp] 213 / 2e-66 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 213 / 3e-66 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 207 / 7e-64 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 201 / 2e-61 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 199 / 2e-60 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 197 / 1e-59 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 197 / 1e-59 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 189 / 3e-57 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G113900.1 pacid=42805464 polypeptide=Potri.005G113900.1.p locus=Potri.005G113900 ID=Potri.005G113900.1.v4.1 annot-version=v4.1 ATGTCCCCTTCTACCCTCACAGCTCTGGCAGAAGAGAAAACCCTCCGAGCAAGCTTTGTTCGGGACGAAGATGAACGTCCGAAAGTGGCATATAACCAAT TCAGCAATGAAATCCCTGTCATTTCAATAGCTGGGATTGATGATGGTGGTGAAAAGAGAGCTGAAATATGCAACAAGATCGTGGAGGCATGTGAGGAATG GGGAGTTTTTCAAATTGTTGATCATGGGGTTGATGCTAAGCTGGTGTCTGAAATGACAACTCTTGCTAAAGAGTTTTTTGCTTTGCCACCGGAAGAGAAG CTTCGGTTTGATATGTCCGGTGGCAAAAAGGGTGGCTTCATTGTCTCCAGCCATTTACAGGGAGAGGCAGTTCAAGACTGGCGTGAAATAGTGACCTTCT TCTCGTACCCAATTCGCACCAGAGACTATTCAAGGTGGCCTGACAAGCCAGAGGCATGGAAAGCAGTGACCGAGGAATACAGTAAGAAGCTAATGGAACT TGCTTGCAAGCTTCTTGGGGTCTTATCAGAGGCTATGGGATTAGAAACAGAGGCCTTAACTAAGGCTTGTGTTGACATGGACCAAAAGGTGGTGGTCAAT TTCTATCCAAAATGTCCACAACCAGACCTTACACTTGGACTCAAACGCCATACTGATCCCGGCACCATCACCCTCTTGCTCCAGGACACCGTTGGTGGTC TTCAGGCCACTAGAGATAACGGAAAGACTTGGATCACCGTTCAACCTGTTGAAGGTGCTTTTGTGGTCAATCTCGGAGACCATGGTCATTATCTTAGCAA TGGAAGATTCAGGAACGCAGACCACCAAGCTGTGGTGAACTCAAACTCTAGCAGGTTGTCCATAGCCACATTCCAGAACCCAGCACCAGATGCTACAGTG TACCCTCTCAAGATTAGAGAGGGAGAGAAGTCGGTGCTAGACGAGCCAATAACATTTGCTGAGATGTATAGGAGGAAGATGAGCAAGGACATTGAGATAG CCAAGAAAAAGAAGTTGGCTAAGGAGCAGCTGCTGAGAGATATGGAGACAGCCAAATTAGAAACTAAGCCCATTGAGGAAATCCTTGCTTGA
AA sequence Show only first row Show all	>Potri.005G113900.1 pacid=42805464 polypeptide=Potri.005G113900.1.p locus=Potri.005G113900 ID=Potri.005G113900.1.v4.1 annot-version=v4.1 MSPSTLTALAEEKTLRASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEK LRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTFFSYPIRTRDYSRWPDKPEAWKAVTEEYSKKLMELACKLLGVLSEAMGLETEALTKACVDMDQKVVVN FYPKCPQPDLTLGLKRHTDPGTITLLLQDTVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNSNSSRLSIATFQNPAPDATV YPLKIREGEKSVLDEPITFAEMYRRKMSKDIEIAKKKKLAKEQLLRDMETAKLETKPIEEILA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	0	1
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	2.00	0.9771
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	2.44	0.9711	CHS6,Pt-CHS.4
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	3.46	0.9495	Pt-CHS.6,CHS2
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	4.47	0.9432
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051600 [exp]	6.32	0.9113	Pt-CHS.2,CHS3
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	6.70	0.9151
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	7.74	0.9330	Pt-CHS.7
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	8.48	0.8927	F3H1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	8.48	0.9184
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	8.77	0.9210

Compare expression of checked genes

Potri.005G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.