Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66230 237 / 1e-75 Chalcone-flavanone isomerase family protein (.1.2) AT3G51230 153 / 6e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057800 [exp] 344 / 4e-118 AT5G66230 155 / 7e-45 Chalcone-flavanone isomerase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025961 [exp] 287 / 7e-95 AT5G66230 239 / 6e-77 Chalcone-flavanone isomerase family protein (.1.2) Lus10014261 [exp] 286 / 2e-94 AT5G66230 233 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G114100.1 pacid=42805294 polypeptide=Potri.005G114100.1.p locus=Potri.005G114100 ID=Potri.005G114100.1.v4.1 annot-version=v4.1 ATGGAGACCCCATCTTCAACAAAAAGAGTTACAAGATCACAAACTGTTGCTGCTCTTAACACCAACAACAATATTCCCCTCTCAAGGAAGATTGAAGATT CTTCTGATAAGGGTGTAACGAAATCAAGAAGAAGGAATGCAAAACAACAACTACAAGATAGGTCTGCACTTATTGATATAACAAATGATTCACCAATTGT TGGGATTGCAATGGGAATTTTAGAGACTCCATCATCAGCATTAGCCAAGCAAAAGAACAGTAGAGCCAAGAACAACATCCCCAACACACCTGGGTCGGGA GAGGCATTGCTTAGGGGTCAAGTGAAAACCCTCTTGCAGAAAGTTGAAGAAGAGGCAGAGCTCTCAAAACTTTCTTTGGAGAACCGTCCTTTTCTGCATC TTCAAGGATTTGTTAATTCTCCAATGGGACTTCTTGCACCAACTCCAGCAAATACTCCTCAGGTCCCTAATCTTTCTGGAGATGACATTGTCTTGGCCTC TGTCACTCCCTTGCCAGTTATTGAAGAGAAATTAAAGATTTGTCAGGAGGTGAGTGAGATCTTTAATGTGAAGAAACAAGAGAGTCTTGAATCTCAAAAG AGTTTGACGAGGTCATTAATGCTGGATTTCTCTGAGAAATCTGAAAGTTCTGATTCATCAAAATGCTCTTCTGCACTGACTTACCAAGGAGATAACTGTG AAGTGATAACAAGTGAAAGCAAAGACAAGTCATCATTGGCAGATGATGACAATGCCTCTATTTGGTCAATTCAGGTCAATGCAAGCACCCATGATGAAGA TGAGGAAGAAGTAATTGAAGAAGAGGAGGAAGAAGAAGAGCATTATTATTATCGTGATGAATATGAAGAGGCAGAAGAGGAGGAGGAGGCTGATGTTGGA GGGTTGCTTGATGAGCTTTGTGAAGGCATTAGCCAAATAAGTGTGAAAGAGAAAGCAATGGCCAAGTTTGAAGGAAAGCACACACGATTTGTTTACAACA GTGATGATGAGATTGTTGAAGAAGTAGTAGACTGTGGAGATGATGATTTACGCTTGAAAGGTTTGCCAACTCCGAAAGGGAAGCACATACGCTTCCATAC AGAAGAGGAATGA
AA sequence Show only first row Show all	>Potri.005G114100.1 pacid=42805294 polypeptide=Potri.005G114100.1.p locus=Potri.005G114100 ID=Potri.005G114100.1.v4.1 annot-version=v4.1 METPSSTKRVTRSQTVAALNTNNNIPLSRKIEDSSDKGVTKSRRRNAKQQLQDRSALIDITNDSPIVGIAMGILETPSSALAKQKNSRAKNNIPNTPGSG EALLRGQVKTLLQKVEEEAELSKLSLENRPFLHLQGFVNSPMGLLAPTPANTPQVPNLSGDDIVLASVTPLPVIEEKLKICQEVSEIFNVKKQESLESQK SLTRSLMLDFSEKSESSDSSKCSSALTYQGDNCEVITSESKDKSSLADDDNASIWSIQVNASTHDEDEEEVIEEEEEEEEHYYYRDEYEEAEEEEEADVG GLLDELCEGISQISVKEKAMAKFEGKHTRFVYNSDDEIVEEVVDCGDDDLRLKGLPTPKGKHIRFHTEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	0	1
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336832 [exp]	1.41	0.9738
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	2.23	0.9706
					Potri.018G114600 [exp]	2.82	0.9727
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	4.24	0.9731
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	4.35	0.9508
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.017G081000 [exp]	4.58	0.9674
AT3G03130			unknown protein		Potri.013G081600 [exp]	6.32	0.9668
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	7.74	0.9615	Pt-CYCMS1.1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	8.83	0.9698
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	9.48	0.9633	Pt-ATK1.1

Compare expression of checked genes

Potri.005G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.