Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) AT3G51220 91 / 8e-23 Plant protein of unknown function (DUF827) (.1) AT1G75720 77 / 1e-17 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023000 [exp] 161 / 8e-50 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 138 / 9e-41 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.003G009400 [exp] 52 / 4e-08 AT1G58070 48 / 1e-06 unknown protein Potri.004G222800 [exp] 49 / 5e-07 AT1G58070 60 / 1e-10 unknown protein Potri.001G369200 [exp] 44 / 5e-05 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.019G021000 [exp] 43 / 5e-05 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028461 [exp] 171 / 8e-53 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10041916 [exp] 167 / 2e-51 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1) Lus10024335 [exp] 88 / 2e-21 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10022531 [exp] 44 / 4e-05 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10036971 [exp] 43 / 4e-05 AT1G75720 75 / 3e-17 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10016626 [exp] 44 / 5e-05 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10015482 [exp] 40 / 0.0005 AT1G58070 108 / 6e-28 unknown protein Lus10019953 [exp] 40 / 0.0006 AT1G58070 99 / 3e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G114400.1 pacid=42805691 polypeptide=Potri.005G114400.1.p locus=Potri.005G114400 ID=Potri.005G114400.1.v4.1 annot-version=v4.1 ATGAACAGAGAAGAGGGTGGATTATTGGTGGTCAATGGACGGGCGGAGATTGATACAAGAGCACCATTCAAGTCTGTCAGAGAAGCAGTGGTGTTGTTTG GGGAAAGAGTTTTAGCTGGGGAAATCTATGCCAACAAGCTCAAAGAGATGCGAACAGGAGGGAGAGAAAATGGACAGGCTGCTCCCTCCAGATTTGGAGC CTTAACAGCTGAGCTTGAGGAAACAAAGCAAAGCCTCCAAAAAGCAAGAGAAGAAGGTAACTTGATGACCTACAGTATAAAATCTCTAAGAGAAGAACTT GAAGAAACAAAGAAAGAGCTACAACGATTAAGGGCAAGAGAAAGAATGCATAAAAAACAACCAGTACTTGATGATCCAGAGATTGAAGACATCAAGTTCG TTGAAAATGCAACCAAAATGGAGATGATCAAGAACCATACTGGTATTGAAGAACCTACAGACTTTCAAAAGAAGAGAAGTGTGAAATTCGCTAGTCCTCC TTCATTGGCTAAGGTTATTGTTTCGAAAGAGGAAGTGCTAGAGAGACCTCACTCTTTTAAAAGGATGGCCAGGAAAAGGTCTCTAATCCCCCTTCTAGGA TGGTTATTTTCAAAAAAGAAAGGAACCCAGGACGATGAGTCTCCTAGATAA
AA sequence Show only first row Show all	>Potri.005G114400.1 pacid=42805691 polypeptide=Potri.005G114400.1.p locus=Potri.005G114400 ID=Potri.005G114400.1.v4.1 annot-version=v4.1 MNREEGGLLVVNGRAEIDTRAPFKSVREAVVLFGERVLAGEIYANKLKEMRTGGRENGQAAPSRFGALTAELEETKQSLQKAREEGNLMTYSIKSLREEL EETKKELQRLRARERMHKKQPVLDDPEIEDIKFVENATKMEMIKNHTGIEEPTDFQKKRSVKFASPPSLAKVIVSKEEVLERPHSFKRMARKRSLIPLLG WLFSKKKGTQDDESPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17940			Plant protein of unknown funct...		Potri.005G114400 [exp]	0	1
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	1.00	0.9357
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	7.74	0.9164
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	9.53	0.8883
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	10.67	0.9039
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	12.32	0.8595
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	14.14	0.8875
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	16.49	0.9010
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	17.66	0.8946
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.017G079600 [exp]	17.74	0.8868
AT3G09980			Family of unknown function (DU...		Potri.010G235600 [exp]	21.90	0.8288

Compare expression of checked genes

Potri.005G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.