Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 504 / 7e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 501 / 2e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 389 / 4e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT2G48080 129 / 2e-32 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT4G02940 119 / 1e-28 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 118 / 3e-28 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012200 [exp] 759 / 0 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.010G102100 [exp] 135 / 1e-33 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 132 / 9e-33 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.014G137700 [exp] 104 / 9e-24 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028462 [exp] 566 / 0 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 557 / 0 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 251 / 2e-80 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10027990 [exp] 122 / 2e-29 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 120 / 8e-29 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 117 / 6e-28 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 115 / 3e-27 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028671 [exp] 65 / 8e-11 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G114800.1 pacid=42803110 polypeptide=Potri.005G114800.1.p locus=Potri.005G114800 ID=Potri.005G114800.1.v4.1 annot-version=v4.1 ATGACCGAACTCAATAAATCCGATAAAGATGACCCGTTCCTCGTTCAATATCAACCTTCCGATCTTAATATCGCATCGGAGTTTCTTTCCACGTGGCTCC CATACCTCTCTCGGGATCTCTGTCATAACTGCTCCAAAACTCTCTCCGATCGCATTCGCTCTCTCTCAGAACTCCAAGGAGAAGATAAGAGTGGGGATTT GCCGACTTTGAATATTAATGTGGAATCGTCAAACGGGAATTGTGGTTCTGATGGTAATTGTAATGATAATTCTGTGGGAAGTTTGAAAGAGGATGATGAC ACGAATTCGTTAGGTAGTTGGAAAGACGGGATAAATGGGTGGTCTGAGCCACCTGTTTCAGAGGCCTCCAGTAGTGGAGTTCATAGTGAATGGCGCTCGG GGATGTCTTGGGCTGATATGGCTCAGGAAGATGAACTTGTGGAAGAGGAGGAACAAGAACAGCAGGAGTTGAATGCACGGATGGTTAATGTGAATGATTC AACTGGTGGGTTGAGGATAACAAAGGTTGTTGGGAAGCCTACTACATTACCAAGGGAGCAAAGGGAATACATTCGGTTTATGAATGTGAAGAGGAAGAAA GACTTTATGTGTTTTGAGAAGATTAATGGAAAGCTTACTAATATTCTCCAGGGCCTGGAGCTTCACACGGGTATTTTCAGTGCTGCGGAGCAGAAGAGGA TTGTTGATTATGTTTATGCATTTCAAGAGAAAGGGAAAAAGGGAGAGTTGAAAGAGCGCACATATTCAGCTCCACAAAAGTGGATGAGGGGCAAAGGGCG GGTGACCCTCCAGTTTGGTTGTTGTTACAATTACACAATTGATAAAAATGGTAATCCGCCAGGCATCCTCCAGGATGAAATGGTAGATCCTATACCTGAC CTTTTTAAAGTGATCATTAGAAGGCTGGTCCAATGGCATGTTATCCCTCCGACTTGTGTGCCCGACAGTTGTATTGTTAACATTTATGAAGAATGGGACT GTATACCACCTCATATTGACAGCCATGATTTTGTTCGACCTTTCTGTACTGTGTCTTTTCTTAGCCAGTGCAATATACTATTTGGATCAAACTTAAAGGT TGTGGGTGCAGGTGACTTTGATGGTCCAATTGCTATCCCTCTTCCTGTGGGATCTGTTCTTGTCTTAAATGGAAATGGAGCCGATGTGGCTAAGCATTGT GTGCCATCAGTTCCTACAAAGAGGATATCAATCACATTTAGAAAAATGGATGAAGCAAAACGTCCTATAGGTTTTGTTCCAGAACCTGATTTGCAGGGAA TTCAGCCATTATCATATGAACTGGATAAAACAAGGAAGTTAAATTCTCCTAAATCAGAGCCTTATGTGAAAAGGCGGCCATATGGTAAAGAGGGTCAGGT GGAAGGGAGGAGATATCCTGAGGATGGTTCCCAATCAGAATCTCGTTACTCAAGTCGGAATCGATGGCCAGCTGCAAATCAGTGGAGGACTAAGGGGAAT ATGGGCAGAGCTGATGGATGA
AA sequence Show only first row Show all	>Potri.005G114800.1 pacid=42803110 polypeptide=Potri.005G114800.1.p locus=Potri.005G114800 ID=Potri.005G114800.1.v4.1 annot-version=v4.1 MTELNKSDKDDPFLVQYQPSDLNIASEFLSTWLPYLSRDLCHNCSKTLSDRIRSLSELQGEDKSGDLPTLNINVESSNGNCGSDGNCNDNSVGSLKEDDD TNSLGSWKDGINGWSEPPVSEASSSGVHSEWRSGMSWADMAQEDELVEEEEQEQQELNARMVNVNDSTGGLRITKVVGKPTTLPREQREYIRFMNVKRKK DFMCFEKINGKLTNILQGLELHTGIFSAAEQKRIVDYVYAFQEKGKKGELKERTYSAPQKWMRGKGRVTLQFGCCYNYTIDKNGNPPGILQDEMVDPIPD LFKVIIRRLVQWHVIPPTCVPDSCIVNIYEEWDCIPPHIDSHDFVRPFCTVSFLSQCNILFGSNLKVVGAGDFDGPIAIPLPVGSVLVLNGNGADVAKHC VPSVPTKRISITFRKMDEAKRPIGFVPEPDLQGIQPLSYELDKTRKLNSPKSEPYVKRRPYGKEGQVEGRRYPEDGSQSESRYSSRNRWPAANQWRTKGN MGRADG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	3.74	0.8435
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	3.87	0.8332
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	7.74	0.8372
AT1G80010	FAR1_related	FRS8	FAR1-related sequence 8 (.1)		Potri.003G031200 [exp]	8.24	0.7783
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.003G066900 [exp]	8.36	0.7842
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	10.48	0.8215
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	10.95	0.8267
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	15.29	0.8081
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.008G179201 [exp]	16.61	0.7879
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.005G152800 [exp]	17.86	0.7883

Compare expression of checked genes

Potri.005G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.