Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21410 73 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT5G49610 64 / 4e-11 F-box family protein (.1) AT1G14315 64 / 5e-11 F-box and associated interaction domains-containing protein (.1.2) AT1G47790 64 / 6e-11 F-box and associated interaction domains-containing protein (.1) AT1G11620 63 / 9e-11 F-box and associated interaction domains-containing protein (.1) AT3G16210 61 / 5e-10 F-box family protein (.1) AT3G22650 61 / 9e-10 ATSFL61, CEG CEGENDUO, S-LOCUS F-BOX 61, F-box and associated interaction domains-containing protein (.1) AT3G21120 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G07870 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT1G58090 59 / 3e-09 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170300 [exp] 521 / 0 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 356 / 2e-120 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 277 / 8e-90 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.001G262900 [exp] 106 / 4e-25 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 106 / 8e-25 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.018G007900 [exp] 104 / 2e-24 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.012G014300 [exp] 101 / 2e-23 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013500 [exp] 100 / 7e-23 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.012G014700 [exp] 98 / 4e-22 AT1G12170 66 / 1e-11 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001105 [exp] 99 / 3e-22 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10007847 [exp] 94 / 6e-21 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10027824 [exp] 91 / 2e-19 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10013872 [exp] 83 / 5e-17 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10007848 [exp] 83 / 8e-17 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 82 / 8e-17 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10028961 [exp] 82 / 1e-16 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10018106 [exp] 79 / 1e-15 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10038606 [exp] 77 / 4e-15 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10040800 [exp] 77 / 6e-15 AT3G21120 84 / 8e-18 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G114900.1 pacid=42805390 polypeptide=Potri.005G114900.1.p locus=Potri.005G114900 ID=Potri.005G114900.1.v4.1 annot-version=v4.1 ATGGCTCTTTCCTTAAGACGTTATGCGTGGCCATCCTACCACAACTTAGATGATTTAAATTGCATTTTAAGAGAGAGAAGCCAAAAGGAACGAGAGATGT CAATAGCAATGGAAACCATGACAGGAGATCCTTTGCCTGAAGATGTGATCATTGAGATTTTATCACGTTTGCCAGTGAAAAATCTACTGCAGTTCAAGTG TGTGTGCAAATCATGGCACGCTATTATCACAAGCCCTAAATTGATATCCAAGCATCTGAGAAATTACTATGACAAAAATGACAGTGACTGTCTCCTAGCT CAGTACCGCGTAACCCAAGCGGGTGAAATTGCTTCGTTTGAGTTGTTGGTAGATGAAACACCAACAAGAGCTTTATCGTATGGATTACTGGATCGCATGC CCTTTCAGAGTCCATATATCTATGGTCCTTGTGACGGAATATTTTACTTGTACGGGCATTTTTATGACTTTCATGCTCTGTGGAACCCCGCAATTAATGA ATTGAAAACTTTACCTCCGATACCCAATCCTCCATTCAGTTTTTCTTATAGCCCTCTGTGGAATGCGTATGGTTTTCGATTACATCCAGTAACTAAGGAT TGCGAGGTGATTGTCATGAGAGAGTATTGGAGAGAAGAAGAGGGAGCATGGGAAGACAGGTATCCCTTAAGTGTATTCGTCTACACGTTAAGCAGTGATT CTTGGAGATACTGGGGGGATTTGTCACGTTATTATCATTTACGTAATAACAAATGCTACATTTGTGTGGAAGGAGTATTCTACTGGCTGGGATCATATGG AGCATGCGGAGATCCCGAAGTGGTCATTAATTTTGACATGGCTACGAACGTGTGCCAAGAGATACAGCTACCAGATTATGACAAGTCGATAAACTCTGAG AGTCTTGCAGTGTACAATGACTCCATCGCTCTCCTCGTCGTTCAAGAGAGCGTTCTTCATGTATGGACATTGGACGAGAGGTGTTGGACCAAGAAATTTG TTGTCGGGCCTCTTTTGGGAGTTCAGTATCCTGTTGGGCATTGGCAGAATAATACGATAATCTTGATATCCGACTCTTATGAATTACTCTTATGTGATCC CAGAACCCAGGAAATGAGTGGTCTTGGATTTGAGGGGGGAACAATACGGTGCGAAGGAATTTTTGCTTACAAGGAGAGCCTAGTTCCAGTGAAGAATGGA CATGAGGAAGCTGAGACAATATCTGATTGTCGAATCATTTGTTCACCACCTTTCAATCGTAACGTCGCAAGCAATGAGAAGTCTTTTCTCATGGATCCAG ATTACGAAGAGGCTCTAAAATTATTTGATTAA
AA sequence Show only first row Show all	>Potri.005G114900.1 pacid=42805390 polypeptide=Potri.005G114900.1.p locus=Potri.005G114900 ID=Potri.005G114900.1.v4.1 annot-version=v4.1 MALSLRRYAWPSYHNLDDLNCILRERSQKEREMSIAMETMTGDPLPEDVIIEILSRLPVKNLLQFKCVCKSWHAIITSPKLISKHLRNYYDKNDSDCLLA QYRVTQAGEIASFELLVDETPTRALSYGLLDRMPFQSPYIYGPCDGIFYLYGHFYDFHALWNPAINELKTLPPIPNPPFSFSYSPLWNAYGFRLHPVTKD CEVIVMREYWREEEGAWEDRYPLSVFVYTLSSDSWRYWGDLSRYYHLRNNKCYICVEGVFYWLGSYGACGDPEVVINFDMATNVCQEIQLPDYDKSINSE SLAVYNDSIALLVVQESVLHVWTLDERCWTKKFVVGPLLGVQYPVGHWQNNTIILISDSYELLLCDPRTQEMSGLGFEGGTIRCEGIFAYKESLVPVKNG HEEAETISDCRIICSPPFNRNVASNEKSFLMDPDYEEALKLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21410			F-box and associated interacti...		Potri.005G114900 [exp]	0	1
AT5G37860			Heavy metal transport/detoxifi...		Potri.006G079400 [exp]	1.00	0.9717
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G215001 [exp]	2.00	0.9594
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.002G128300 [exp]	3.46	0.8990
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.006G247800 [exp]	7.74	0.9330
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	11.48	0.9131
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G098400 [exp]	12.44	0.9227
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	15.87	0.9128
					Potri.016G003033 [exp]	18.97	0.8918
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.001G308300 [exp]	19.97	0.8918
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	21.02	0.8968

Compare expression of checked genes

Potri.005G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.