Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17975 328 / 9e-113 zinc finger (Ran-binding) family protein (.1) AT2G26695 53 / 1e-08 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 51 / 1e-07 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 47 / 5e-06 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT1G67325 45 / 5e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G48570 44 / 8e-05 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061300 [exp] 52 / 4e-08 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 51 / 1e-07 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 50 / 1e-07 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 48 / 9e-07 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G172500 [exp] 50 / 1e-06 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.001G172700 [exp] 48 / 1e-06 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 48 / 1e-06 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G056000 [exp] 47 / 9e-06 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.012G046500 [exp] 47 / 1e-05 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019433 [exp] 59 / 5e-10 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 56 / 3e-09 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030054 [exp] 51 / 1e-07 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10033023 [exp] 50 / 2e-06 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10006412 [exp] 49 / 3e-06 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10011357 [exp] 47 / 1e-05 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 47 / 1e-05 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10002896 [exp] 45 / 2e-05 AT3G15680 181 / 9e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10009681 [exp] 45 / 4e-05 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10009049 [exp] 44 / 0.0001 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.005G115100.1 pacid=42803943 polypeptide=Potri.005G115100.1.p locus=Potri.005G115100 ID=Potri.005G115100.1.v4.1 annot-version=v4.1 ATGGGAGAAGGAAGAGAAGGGGATTGGGAGTGCAGTGGATGTCAAAACAGAAACTATGCGTTTAGATCTTTTTGTAATAGATGCAAACAACCTCGACTTC TTGTTGATAACAAAACCCCACCTGACTCTAAATGGCTCCCTCGTATTGGTGATTGGATCTGCACTGGTTGCACTAACAACAATTATGCATCACGAGAAAA GTGCAAGAAGTGTGGGCAACCAAAGGAGGTAGCGGCAATGCCAGCAATTGCAATGCCTGGAGTGTCTCTCCCAACTTATTCACATTATTTTGCCAGGAGC CCTGGAGGACCAGACCAAAGGTTGAATATTGGATTAGAGGGCAATGGTGCTCTCCAGCAACCAGTACCCTTGAATTCAAGCTGGTCTGGAGGAGGGGCTG ATAATTATGGAGTTCAGCAGACCTCTACTTGGCCTTTGGGTGGAAAACAGATGTCTGGACATCCATATGCAAACCCTCTAAATCAACCCCCTCCTCCAAT TCCTAAAGGATGGCGAAATGGTGACTGGCTATGCAATTGTGGCTTCCACAATTACTCTTCACGTGCACAGTGCAAAAAGTGCAATGCTTCTTTGCCACCA GTGGGAACAAAGCGATTGGCATCTCAAGAATTTTTCCAGGACTGGGAGAACAAAAGATTAAATTCTGGAAATACAGATGGGCAACCACAACCATATCCAA GCTTCAATCAAATGGCAGGGACCAATGGTGACCAAAGTTCAGGAGTTTATGTTTCCTATCCCACTTATAGTACAGAACTAGCTCCAAATTGGCAAGCACC AGTGCAAATTCCACTTCAAATAACAACGCCTGCTCTCCTTGGAAAAGGAGCCAAGCAATGGCGTAATGGAGATTGGATGTGTGCAAATTGCAACAATCAC AACTATGCTTCTCGTGCACAGTGCAACAGGTGTAAGACGCAAAGAGATGTGGTCGCTCAGCCAGTTCCCCAGCCAGTCAATGTTGTGTAA
AA sequence Show only first row Show all	>Potri.005G115100.1 pacid=42803943 polypeptide=Potri.005G115100.1.p locus=Potri.005G115100 ID=Potri.005G115100.1.v4.1 annot-version=v4.1 MGEGREGDWECSGCQNRNYAFRSFCNRCKQPRLLVDNKTPPDSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMPGVSLPTYSHYFARS PGGPDQRLNIGLEGNGALQQPVPLNSSWSGGGADNYGVQQTSTWPLGGKQMSGHPYANPLNQPPPPIPKGWRNGDWLCNCGFHNYSSRAQCKKCNASLPP VGTKRLASQEFFQDWENKRLNSGNTDGQPQPYPSFNQMAGTNGDQSSGVYVSYPTYSTELAPNWQAPVQIPLQITTPALLGKGAKQWRNGDWMCANCNNH NYASRAQCNRCKTQRDVVAQPVPQPVNVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17975			zinc finger (Ran-binding) fami...		Potri.005G115100 [exp]	0	1
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	4.00	0.7813
					Potri.010G046225 [exp]	7.21	0.7263
					Potri.008G084200 [exp]	9.32	0.7550
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	14.69	0.7360
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	15.00	0.7416
AT3G61800			unknown protein		Potri.014G099300 [exp]	17.77	0.7645
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	18.76	0.7544
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Potri.001G252100 [exp]	19.89	0.6896
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	20.97	0.7073
AT5G22820			ARM repeat superfamily protein...		Potri.009G151100 [exp]	24.00	0.7187

Compare expression of checked genes

Potri.005G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.