Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19940 587 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 565 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G11050 353 / 4e-115 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G02800 349 / 7e-115 ATCEL2 cellulase 2 (.1) AT4G02290 346 / 1e-113 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G64390 349 / 2e-113 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G44550 334 / 2e-109 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT4G09740 331 / 4e-108 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 330 / 1e-107 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT2G32990 331 / 2e-107 ATGH9B8 glycosyl hydrolase 9B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023900 [exp] 611 / 0 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 599 / 0 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.014G157600 [exp] 349 / 2e-114 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 346 / 3e-112 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.002G202400 [exp] 340 / 3e-111 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.003G139600 [exp] 342 / 9e-111 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G356000 [exp] 336 / 2e-109 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G126900 [exp] 334 / 6e-109 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.007G071200 [exp] 338 / 7e-109 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014265 [exp] 591 / 0 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10033156 [exp] 588 / 0 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 583 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10025965 [exp] 565 / 0 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10017525 [exp] 354 / 8e-117 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10035316 [exp] 348 / 3e-114 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10032377 [exp] 349 / 3e-113 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10008208 [exp] 343 / 3e-112 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001833 [exp] 343 / 4e-111 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 340 / 7e-111 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.005G115400.1 pacid=42804849 polypeptide=Potri.005G115400.1.p locus=Potri.005G115400 ID=Potri.005G115400.1.v4.1 annot-version=v4.1 ATGGAAGCTAAAGACGTAGAGGATACAGAATCTAATTTTCGTTGGTGTTGGTTTTTGCTAGTTTCAGTGATTGCAATTCTTGTCATAGTAGCAGGTGTAC TCGCAATCTTAGAGGACTTAAAAGACTCCAAGAAAGATTCAGCTTCACATCATCCTGGACCTGTTGTGAAAAAATATGCTGATGCTCTTGAGATTGCTTT GCAATTCTTCGATGGGCAAAAATCTGGAAAGTTGGTGAATAACAGGATCGGGTGGAGAGGGGATTCAGGGCTACTAGATGGGATTGAGATGAACTTGGAT TTATCGAAAGGAATGTATGATGCTGGGGATCTAATGAAGTTTGGATTTCCTATGGCTTTCACTGCAACAATGTTGTCTTGGGCAATTCTTGAATATGAAG AAAATATGAAGACAGCAAAGCAATTAGGACATGCCCGGGATTCACTGAAGTGGATCACTGATTTTCTCATCAATGCTCATCCTTCTGAGAATGTGCTTTA TATCCAGGTGGGTGATCCTGAACTGGACCACCAATGCTGGGAAAGACCTGAAGCCATCAGAGGAATAAGGCCATTGACGCAAGTTAACACATCCTTCCCT GGGACAGAGGTTGCAGCAGAAACGGCAGCTGCTATGGCATCAGCATCTCTTGTTTTCAAGAAAATCGACTCCTCTTATTCCAATCTGCTCCTTGAGCATG CCCAACAACTCTTTTCTTTTGCTGATGCTTATAGAGGTTCTTACAGTGTCAGCATTCCCCAAGTGCAAAACTACTATAACTCCACAGGATATGAAGATGA ACTCTTGTGGGCAGCAGCCTGGCTTTATCATGCATCCAAAGACCTGTCATACCTCAAATATGTAACTGAATTAAATGGTCAACAATTTGCTAATTGGGGA AATCCAACTTGGTTTAGTTGGGACGACAAGCATGCTGGAACTCATGTCCTGTTGTCCAGGTTAAATATTTTTGGTGCAAAAGGGATGTCAAGTGAGGAGA ACCTTGACCTTCAGATGTACAGGAAAACATCCGAGGCCATCATGTGCGAGCTCCTTCCAGATTCACCAACAGCCACATCTAGCAGAACAAAAGGTGGTCT GGTATGGGTCTCAAAATGGAACTGCTTGCAACATGCTATGGCTTCTGCATTTCTAGCTGTTCTATTCGGTGATTACATGGTCACAACCCAGATTTCAACT CTATATTGCCATGGAAAATCCTACAGTCCAGCTGATTTGCGCAACTTTGCCATTTCACAGGCAGATTATATTTTGGGAAATAATCCAATGAAAATGAGCT ACCTTGTTGGGTATGGGAGTAACTACCCTCAAAATGTACATCATAGGGGAGCTTCAATTCCTGTCGACGCCAACACTACCTGCAAGGATGGATTCACGTG GCTTGACTCGATCAATCCCAATCCAAATGTTGCTGTTGGAGCAGTGGTTGGTGGCCCCTTCCTAAACGAGACCTATATCGACTCACGAAACAACTGGATG CAAGCTGAACCTACCACTTACAACAGTGCTCTCGTTGTCAGTCTCCTCTCCAGCTTAGTCAGGAGTTCTTCAGTGGTCGACTCTTTTACATAG
AA sequence Show only first row Show all	>Potri.005G115400.1 pacid=42804849 polypeptide=Potri.005G115400.1.p locus=Potri.005G115400 ID=Potri.005G115400.1.v4.1 annot-version=v4.1 MEAKDVEDTESNFRWCWFLLVSVIAILVIVAGVLAILEDLKDSKKDSASHHPGPVVKKYADALEIALQFFDGQKSGKLVNNRIGWRGDSGLLDGIEMNLD LSKGMYDAGDLMKFGFPMAFTATMLSWAILEYEENMKTAKQLGHARDSLKWITDFLINAHPSENVLYIQVGDPELDHQCWERPEAIRGIRPLTQVNTSFP GTEVAAETAAAMASASLVFKKIDSSYSNLLLEHAQQLFSFADAYRGSYSVSIPQVQNYYNSTGYEDELLWAAAWLYHASKDLSYLKYVTELNGQQFANWG NPTWFSWDDKHAGTHVLLSRLNIFGAKGMSSEENLDLQMYRKTSEAIMCELLPDSPTATSSRTKGGLVWVSKWNCLQHAMASAFLAVLFGDYMVTTQIST LYCHGKSYSPADLRNFAISQADYILGNNPMKMSYLVGYGSNYPQNVHHRGASIPVDANTTCKDGFTWLDSINPNPNVAVGAVVGGPFLNETYIDSRNNWM QAEPTTYNSALVVSLLSSLVRSSSVVDSFT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G115400 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Potri.004G037700 [exp]	3.46	0.8792
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.018G069200 [exp]	11.53	0.8937
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	15.42	0.8551
AT5G16460			Putative adipose-regulatory pr...		Potri.013G085850 [exp]	17.88	0.8830
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	23.49	0.8792
					Potri.011G143050 [exp]	30.59	0.7964
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.005G235200 [exp]	31.93	0.8725
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.002G009900 [exp]	40.09	0.8602
AT2G39720		RHC2A	RING-H2 finger C2A (.1)		Potri.010G201300 [exp]	41.35	0.7134
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	47.54	0.8200

Compare expression of checked genes

Potri.005G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.