Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17990 385 / 5e-134 unknown protein AT5G66250 332 / 1e-113 kinectin-related (.1.2.3.4) AT4G36105 187 / 1e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012600 [exp] 610 / 0 AT2G17990 380 / 6e-132 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041920 [exp] 434 / 2e-153 AT2G17990 334 / 3e-114 unknown protein Lus10028465 [exp] 416 / 9e-146 AT2G17990 312 / 6e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G115500.2 pacid=42802801 polypeptide=Potri.005G115500.2.p locus=Potri.005G115500 ID=Potri.005G115500.2.v4.1 annot-version=v4.1 ATGGCAGGAGAAGATGGTGACTTGCCGAGTTTGACGTTGCAAGTCAGTGAACCTCATGAAACGTGGAAGCAGGAGATGGAAAGGCGACAGTCCCAAGTGG ATGTGTTACAAGTTAAGCTTATGGAGGTGAAGGCTTGTATGCAAGGGTCAGAGGGAGATGCAAAGAAGGAATTGGAGGTTCTTTGGCGAAGAGTGAAAAC AACTGCGACATTGTTGACCTACTTGAAATCAAAAGCGAGAGTCATGGCTGTTCCTGATTTAGCACACACTTCATGTGGAATAAAGGAACTAGAAGGAGTG GGACTTGTTGATAGGAGTGGAACCCCACTGTCCAGCTGGTCCAGGAATGTTGATCTTCCTTCATTTGGTCCAGATGAAGAAGCATGTATGAGACTTGGAC AGCAACAAGGAAGCTACGATGAACAAGATGAAGCTTATATTGGTGAATTACTCAAGTGTGTGCAGATGGTATCGAATGTGATGGAAGGCCTTGTTAAAAG AGTTATAATAGCAGAATCAGAAACTGCTGTTGAGAAAGATAAGGTAACTTTAAGCCAGGAAGAAAATAGAAGGAAAGCAATCCAAATTGAGAACATGTCT TCAAAATTAGAGGAGATGGAGCGGTTTGCTCTGGGTACAAATGTTATTCTGAATGAGATGCGGCAGAGGGTTGAAGATTTGGTTGAAGAGACATCTAGGC AGAGGCAGCGCGCAGCAGAAAATGAGCAAGAGCTTTGCCGAGTGAAAAGGGACTTTGAGTCTCTCAAATCCTATGTTAGCAGTCTTATTAGTGTCAGAGA GACACTTCTTTCATCAGAGAGGCAATTTCAAACTATTGAGAGGCTTTTTGAGCGGCTAGTTGCAAAAACAACACAATTGGAGGGCGAGAAAATGCAGAAA GAGACTGAAGTTCAAAAACTTATGGAAGAGAATGTGAGGTTGAGTGCCCTCCTTGACAAGAAAGAGGCTCAACTTCTGGCCATGAATGAACAATGCAAGG TAATGGCCCTGAATGCTTCAAATATATGA
AA sequence Show only first row Show all	>Potri.005G115500.2 pacid=42802801 polypeptide=Potri.005G115500.2.p locus=Potri.005G115500 ID=Potri.005G115500.2.v4.1 annot-version=v4.1 MAGEDGDLPSLTLQVSEPHETWKQEMERRQSQVDVLQVKLMEVKACMQGSEGDAKKELEVLWRRVKTTATLLTYLKSKARVMAVPDLAHTSCGIKELEGV GLVDRSGTPLSSWSRNVDLPSFGPDEEACMRLGQQQGSYDEQDEAYIGELLKCVQMVSNVMEGLVKRVIIAESETAVEKDKVTLSQEENRRKAIQIENMS SKLEEMERFALGTNVILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKSYVSSLISVRETLLSSERQFQTIERLFERLVAKTTQLEGEKMQK ETEVQKLMEENVRLSALLDKKEAQLLAMNEQCKVMALNASNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17990			unknown protein		Potri.005G115500 [exp]	0	1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	1.73	0.9523	SYP71.2
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	4.00	0.9210	Pt-SEC22.1
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	4.24	0.9222	SYP131.2
AT4G30900			DNAse I-like superfamily prote...		Potri.006G184300 [exp]	5.56	0.8916
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Potri.018G086400 [exp]	7.74	0.9141
AT3G58130			N-acetylglucosaminylphosphatid...		Potri.012G041700 [exp]	8.06	0.9044
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	8.36	0.9227	Pt-PRO1.4
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	8.48	0.9104
AT1G35780			unknown protein		Potri.005G165500 [exp]	14.07	0.8995
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.008G135100 [exp]	14.69	0.8951

Compare expression of checked genes

Potri.005G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.