Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13810 599 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT4G33680 593 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 74 / 4e-14 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 69 / 1e-12 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G77670 64 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G53970 63 / 1e-10 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G23590 45 / 6e-05 Tyrosine transaminase family protein (.1) AT5G11520 45 / 9e-05 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT4G23600 42 / 0.0006 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G23310 42 / 0.0006 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013200 [exp] 792 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 605 / 0 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.009G082100 [exp] 589 / 0 AT4G33680 736 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 75 / 2e-14 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 74 / 8e-14 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 64 / 1e-10 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 62 / 2e-10 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 62 / 3e-10 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 52 / 3e-07 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020959 [exp] 620 / 0 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10035646 [exp] 588 / 0 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10010748 [exp] 580 / 0 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000205 [exp] 96 / 2e-23 AT4G33680 120 / 5e-33 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 83 / 9e-17 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 81 / 3e-16 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023117 [exp] 64 / 6e-11 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 63 / 2e-10 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 60 / 2e-09 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011479 [exp] 58 / 5e-09 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.005G115800.1 pacid=42804303 polypeptide=Potri.005G115800.1.p locus=Potri.005G115800 ID=Potri.005G115800.1.v4.1 annot-version=v4.1 ATGTACAGCTCTTCTGCTGGCAATTCTATGTTACGTAGAAATTTCTTGCGGCCTAGGATTATCCAGGCCAGTTATAAAACCCAGAAAGAGGGAATTGCTT GCAATACAAAGGTACCCCGCAATGTCAACATGGAGAAGTTACAGAGTGCCTATTTGTTTCCTGAGATCTCAATGCGTGAGGTTCAACACATTGAGAAGTA CCCAGATGCAAAATTGATAAGCCTTGGAATTGGTGACACCACAGAGCCCATACCGGATATCATAGCTTCAAGCATGGCAAACTATGCACGTTCCCTTTCA ACAGCAGAAGGTTATAGTGGGTATGGAGCTGAGCAAGGCAACAAAGCCTTGAGGAAAGCTATTGCTGAAACATTTTACAGAGATGTTCGGGTAAAGGAAA CAGAAGTTTTTGTGTCAGATGGCTCACAGTGTGATATTACTCGCCTTCAGCTGCTGTTTGGTTCCAATGTGTCAATAGCTGTGCAGGATCCATCCTTTCC AGCCTATGTAGATTCAAGTGTCATAATTGGTCAAGCTGGTGATTTTGAAGATAAAACTGGGATGTATGGGAAAATTCAGTACATGAAATGTCTGCCTAAA ACTAACTTTTTTCCCGACTTAGCAACAGCTTCAAGGTCAGATATAATTTTCTTTTGCTCTCCGAATAATCCCACTGGTCATGCAGCAACACGACAGCAGT TGGAGCAACTTGTGAAGTTTGCAAAGGAGAATGGATCAATCATAATTTTTGACTCTGCGTATGCAGCTTATATCAGTGATGATTCCCCTCGATCTATCTT TGAAATTCCTGGGGCGAGAGAGGTTGCGATTGAAGTTTCCTCTTTCTCTAAATTTGCTGGGTTCACAGGCATTCGTCTTGGCTGGACAGTTGTTCCTGAA GAGCTGTCCTTTTCAAATGGTTTTCCTGTAATAAATGACTTCAATCGTATTGTTTGCACTTGCTTCAATGGAGCATCAAATATAGCCCAGGCTGGTGGAC TGGCGTGTCTTTCCCCAGAGGGTTTTGCGTCTGTGCATTCCATAATCAAATGCTACAAGGAGAACGCAAAAATACTGCGTGACACCTTTTCTTCTCTTGG TCTAAAAGTATATGGTGGTGAAAATGCTCCTTACCTTTGGGTTCATTTTCCTGGTTCAAAATCTTGGGATATATTTACTGAGATTCTGGAGAAGACTCAT ATAATAACTGTTCCAGGTTCTGGATTTGGTCCAGAAGGCGAAGAGTTCATGAGAATTAGTGCTTTTGGACACAAAGAGAGTATCATAGAAGCCGCAAGGA GGCTGGGAAACCTTTATCCATAG
AA sequence Show only first row Show all	>Potri.005G115800.1 pacid=42804303 polypeptide=Potri.005G115800.1.p locus=Potri.005G115800 ID=Potri.005G115800.1.v4.1 annot-version=v4.1 MYSSSAGNSMLRRNFLRPRIIQASYKTQKEGIACNTKVPRNVNMEKLQSAYLFPEISMREVQHIEKYPDAKLISLGIGDTTEPIPDIIASSMANYARSLS TAEGYSGYGAEQGNKALRKAIAETFYRDVRVKETEVFVSDGSQCDITRLQLLFGSNVSIAVQDPSFPAYVDSSVIIGQAGDFEDKTGMYGKIQYMKCLPK TNFFPDLATASRSDIIFFCSPNNPTGHAATRQQLEQLVKFAKENGSIIIFDSAYAAYISDDSPRSIFEIPGAREVAIEVSSFSKFAGFTGIRLGWTVVPE ELSFSNGFPVINDFNRIVCTCFNGASNIAQAGGLACLSPEGFASVHSIIKCYKENAKILRDTFSSLGLKVYGGENAPYLWVHFPGSKSWDIFTEILEKTH IITVPGSGFGPEGEEFMRISAFGHKESIIEAARRLGNLYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.005G115800 [exp]	0	1
AT4G31290			ChaC-like family protein (.1)		Potri.018G002900 [exp]	58.60	0.6380
AT2G40370		LAC5	laccase 5 (.1)		Potri.010G183600 [exp]	71.27	0.7118
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.003G095701 [exp]	86.74	0.6511
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.013G079700 [exp]	104.98	0.6670	NAC152
AT4G36945			PLC-like phosphodiesterases su...		Potri.005G139400 [exp]	110.22	0.6898
AT2G42670			Protein of unknown function (D...		Potri.011G067300 [exp]	161.90	0.6686
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	193.63	0.6511
AT5G20120			unknown protein		Potri.018G066700 [exp]	193.93	0.6579
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Potri.013G044100 [exp]	203.22	0.6455	Pt-EIN4.3
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.003G093400 [exp]	209.29	0.6558

Compare expression of checked genes

Potri.005G115800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.