Plant FIBer expression Database

Potri.005G116001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19860 122 / 2e-32 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT3G51180 96 / 3e-22 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT5G66270 90 / 2e-20 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G013600
[exp]
270 / 2e-87 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.002G025100
[exp]
134 / 1e-36 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.005G236300
[exp]
124 / 5e-33 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.014G132800
[exp]
53 / 1e-07 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2)
Potri.002G209216
[exp]
49 / 2e-06 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024316
[exp]
97 / 6e-23 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10012404
[exp]
95 / 3e-22 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10040921
[exp]
49 / 2e-06 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
Lus10009816
[exp]
48 / 5e-06 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.005G116001.1 pacid=42805703 polypeptide=Potri.005G116001.1.p locus=Potri.005G116001 ID=Potri.005G116001.1.v4.1 annot-version=v4.1
ATGAAGCGATCGAGCAAATCGAACAGGGTTTCGTGGGCACCTGGTCTTAATCTTTGTCAGGAGAGGCTCTTTGTATCTGAGGATTGCCCTTCAAAAGTTG
GCGGACAAGTCCAAGATCATCTTCAGAAAAAGACATCATTGCTTTTGCTCCATTCGAGTGGTAAAGAACCAAATGATTTCCCCCCGGGATTTGAAGGCAG
TCACTTCTTGAATCCATGTAAAAAGGAATTGTCCTGCTTTCCTAGGATTCAATGGAAGTGCCCTCCCAAATTTGTTGTCAGTTCCAACTGGCATGTGACA
GCTGGAGAAGAAAGCCAGGAATCACAGGCCCAAAAACTGAGGGAAATGAGAGCTCTTGAAGCATTTTATCCACGCCCTTCTGCTGTTCCTCCCAGCCCTG
TTGTTTCTTTGGACGTAGAAGATACAGATTATGATGATAGCCTCACTCCAATCATCCCTCTCATTCCTGTTGAAGAGGAGGAAGCCACAGAACTGCCATC
TGATTTGACAGAACCACTGAAAACTTCCCAGTCACCAGCATTGCCTCCGTTTTTATTGTCATTTGGAACCCTGAACTCTTCAAAATGCATCACCCCTGCT
TCAAATCCACTCTTAAGTGAAAAAACAGCATTTGGAAAACTACACCTAGTGAGGAGCAGCCATGGTCGAAGCCAACATGTCAGATTCCCATATCCTGTCC
GAAACCTGCCATGCCTTTGCCATCAATGCCATCCAACGGATGCTTGTATCTTCAACCTAGTCAGATGCACCCGACAGTAA
AA sequence
>Potri.005G116001.1 pacid=42805703 polypeptide=Potri.005G116001.1.p locus=Potri.005G116001 ID=Potri.005G116001.1.v4.1 annot-version=v4.1
MKRSSKSNRVSWAPGLNLCQERLFVSEDCPSKVGGQVQDHLQKKTSLLLLHSSGKEPNDFPPGFEGSHFLNPCKKELSCFPRIQWKCPPKFVVSSNWHVT
AGEESQESQAQKLREMRALEAFYPRPSAVPPSPVVSLDVEDTDYDDSLTPIIPLIPVEEEEATELPSDLTEPLKTSQSPALPPFLLSFGTLNSSKCITPA
SNPLLSEKTAFGKLHLVRSSHGRSQHVRFPYPVRNLPCLCHQCHPTDACIFNLVRCTRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G116001
[exp]
0 1
AT5G66850 MAPKKK5 mitogen-activated protein kina... Potri.005G135100
[exp]
7.74 0.8246
AT2G19710 Regulator of Vps4 activity in ... Potri.006G149800
[exp]
7.74 0.8465
AT2G40000 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR ... Potri.010G191300
[exp]
11.48 0.8503
AT1G44130 Eukaryotic aspartyl protease f... Potri.005G179900
[exp]
12.12 0.7550
AT5G43470 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PAR... Potri.003G149800
[exp]
14.49 0.8458
AT3G21220 ATMAP2K_ALPHA, ... ARABIDOPSIS THALIANA MITOGEN-A... Potri.010G249300
[exp]
15.03 0.7683 MKK4.1
AT3G47570 Leucine-rich repeat protein ki... Potri.003G150050
[exp]
18.24 0.8468
AT1G61190 LRR and NB-ARC domains-contain... Potri.019G014358
[exp]
19.44 0.8181
AT1G69550 disease resistance protein (TI... Potri.005G030700
[exp]
23.08 0.8253
AT3G62420 bZIP ATBZIP53 basic region/leucine zipper mo... Potri.002G196200
[exp]
26.45 0.7940

Potri.005G116001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.