Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) AT5G22540 322 / 3e-106 Plant protein of unknown function (DUF247) (.1) AT3G47250 319 / 1e-104 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT5G22550 313 / 3e-102 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G44710 297 / 1e-95 Plant protein of unknown function (DUF247) (.1) AT3G47200 291 / 8e-94 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22560 293 / 9e-94 Plant protein of unknown function (DUF247) (.1) AT3G47210 283 / 1e-90 Plant protein of unknown function (DUF247) (.1) AT3G50120 265 / 6e-83 Plant protein of unknown function (DUF247) (.1) AT3G50170 264 / 2e-82 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013800 [exp] 763 / 0 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 457 / 6e-159 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 280 / 1e-88 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 266 / 1e-83 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 241 / 3e-75 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 239 / 2e-74 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 236 / 5e-73 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 231 / 3e-70 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 226 / 3e-69 AT4G31980 232 / 3e-69 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035568 [exp] 518 / 0 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 506 / 9e-178 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 461 / 3e-160 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 450 / 5e-156 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 263 / 3e-82 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 246 / 1e-76 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 246 / 1e-76 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 243 / 4e-75 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 243 / 5e-75 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 221 / 3e-69 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G116100.1 pacid=42802477 polypeptide=Potri.005G116100.1.p locus=Potri.005G116100 ID=Potri.005G116100.1.v4.1 annot-version=v4.1 ATGATCAAGACGAGTGAAATGGAGAGCAATTCAGTAGAAGATGAAGAAGGCAATGATCATGTCATAAGAATTTGGGAGGTGAACGAGGATCGCTTGAACT TGATGCACCAAAAAATCTCCGACCCACCAAAATTATTGACCAAAGCAGCTGCTAACAGTTCATGCTGCATCTTTAAAGTCCCCCAAAGGTTCATCGATAT CAACGGTAAGTCCTACCAACCTCATGTAGTTTCAATAGGACCTTATCACCATGGTGAGGAACACCTTAAAATGATTGAAGAACACAAGTGGAGATATTTA GGTTCTATCCTCTCGAGGACACAGAACAAAGGTTTGGACTTGGAGGTCTTGTTGAAGGCAATACAGCCACTAGAAAAGAAAGCAAGAGAGTGTTACTCAC AAATTATCCACTTTGACACTGATGAATTTATTGAGATGATGGTTGTTGATGGTTGTTTTATTATAGAGTTGTTTCGTAAAGTTGGAAATGTTGTTGAATT CGAGGTTGATGACCCTATTGTCACCATGGCATGGATCATCCCTTTTTTTTACAGGGATTTACTTAGACTCGAGAACCAGATTCCTTTCTTTGTTCTTGAG TGTTTATTTGATATAACAAGAATGCCAGGAGAAGAATCTGGCCCTTCTTTGTGCAAACTTTCGTTGGATTTCTTCAATTATGCTCTTCAAAGACCAGATA ATATTATTGCAAGGCATAATGATCTTAATGCCAAACATCTACTCGATTTAGTTCGTTCAAGTTTCATAGATTTTGAGCAAGGCCAATCACTCCATGTGGA CACATCGACTCCCATGATTCACTCTGTATCCAAACTTCGCCGTGCCGGAATTGAGCTCAGTCAAGGAAATCCTGAGGATAGTTTCTTGGTGGTGAAATTC AAGAACGGGGTGATAGAGATGCCTACCATAACCATTGATGAAACTGTAACTTCTTTTTTGCTAAATTGTGTAGCATTCGAGCAGTGTCATAATGGTTCTT CCAAGCATTTCACAACGTATGCAACTCTTCTGGATTGCCTGGTTAACACCTTCAAAGATGTAGAACATCTATCTGACTGCAATATTATCGAGAATTACTT TGGTACTGATTCAGAAGTTGCAAGTTTCATCAATGATCTTGGTAAAGAAGTAGCATTTGATATCGAAAGGTGTTATTTGTCCAGTTTGTTCCATGATGTT GACCAATACTACAAGAATAGTAGGCACGTACAGTGGGCAAGCTTCAAGTATACTTATTTTAGCACTCCATGGTCTTTTGTATCAGCATTGGCTGCCTTGA TTATCCTTCTTCTTACGGTATCTCAAACCGTCTACACCATTTATGGCACTTACAAAAAGTAA
AA sequence Show only first row Show all	>Potri.005G116100.1 pacid=42802477 polypeptide=Potri.005G116100.1.p locus=Potri.005G116100 ID=Potri.005G116100.1.v4.1 annot-version=v4.1 MIKTSEMESNSVEDEEGNDHVIRIWEVNEDRLNLMHQKISDPPKLLTKAAANSSCCIFKVPQRFIDINGKSYQPHVVSIGPYHHGEEHLKMIEEHKWRYL GSILSRTQNKGLDLEVLLKAIQPLEKKARECYSQIIHFDTDEFIEMMVVDGCFIIELFRKVGNVVEFEVDDPIVTMAWIIPFFYRDLLRLENQIPFFVLE CLFDITRMPGEESGPSLCKLSLDFFNYALQRPDNIIARHNDLNAKHLLDLVRSSFIDFEQGQSLHVDTSTPMIHSVSKLRRAGIELSQGNPEDSFLVVKF KNGVIEMPTITIDETVTSFLLNCVAFEQCHNGSSKHFTTYATLLDCLVNTFKDVEHLSDCNIIENYFGTDSEVASFINDLGKEVAFDIERCYLSSLFHDV DQYYKNSRHVQWASFKYTYFSTPWSFVSALAALIILLLTVSQTVYTIYGTYKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	0	1
					Potri.015G023750 [exp]	2.23	0.9298
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	4.89	0.9189
					Potri.003G054001 [exp]	6.00	0.9095
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	7.07	0.9110
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	7.74	0.9134	Pt-CYP704.1
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	8.12	0.8657	Pt-IFS1.53
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007600 [exp]	8.48	0.8775
AT1G68220			Protein of unknown function (D...		Potri.010G120500 [exp]	10.04	0.8438
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	11.22	0.9079
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.015G020500 [exp]	20.19	0.8879

Compare expression of checked genes

Potri.005G116100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.