Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GMD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51160 661 / 0 GMD2, MUR_1, MUR1 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G66280 659 / 0 GMD1 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) AT2G47650 62 / 3e-10 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 59 / 2e-09 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 58 / 5e-09 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT4G30440 57 / 7e-09 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G10960 53 / 1e-07 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT3G23820 52 / 4e-07 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 50 / 9e-07 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT2G28760 50 / 1e-06 UXS6 UDP-XYL synthase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013900 [exp] 734 / 0 AT3G51160 670 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G204400 [exp] 67 / 3e-12 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 63 / 1e-10 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 62 / 2e-10 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G320000 [exp] 58 / 5e-09 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.016G080500 [exp] 57 / 1e-08 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.017G059100 [exp] 56 / 3e-08 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.006G178500 [exp] 50 / 1e-06 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.011G156100 [exp] 49 / 3e-06 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041823 [exp] 686 / 0 AT5G66280 677 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10028373 [exp] 519 / 0 AT5G66280 519 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10030368 [exp] 66 / 1e-11 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 61 / 4e-10 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10003605 [exp] 61 / 8e-10 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 58 / 4e-09 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10025293 [exp] 54 / 7e-08 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 53 / 2e-07 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10019967 [exp] 51 / 6e-07 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10010942 [exp] 51 / 1e-06 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.005G116200.1 pacid=42802506 polypeptide=Potri.005G116200.1.p locus=Potri.005G116200 ID=Potri.005G116200.1.v4.1 annot-version=v4.1 ATGGCATCCGAATCAGACCAACCCCGATCCGCCTCCGCCACTCCCGTTAACGGCGAAATCAAACCCAAAATCGCCCTAGTCACCGGTATAACCGGTCAGG ATGGTTCATATCTCACTGAATTCCTCCTCAACAAAGGCTATGAAGTTCATGGGCTGATTCGTAGGTCCTCCAATTTCAACACGCAGCGGATTAACCATAT TTATATAGATCCACACAATGTCCATAAAGCCCGAATGAAGCTCCATTATGCAGATCTCTCTGACGCGTCGTCTCTCCGTCGTTGGCTCGACACTATCTAC CCCGACGAAGTCTACAACCTTGCAGCCCAATCCCATGTGGCAGTCTCTTTCGAAGTCCCTGATTACACGGCGGATGTCGTCGCCACCGGAACTGTCCGCC TTCTTGAGGCGGTGAGGTCTCATATTGCCGCGACAGGGCGAAGCCATGTCAAGTACTATCAAGCGGGATCTTCGGAAATGTTTGGGTCTACGCCGCCACC GCAATCAGAAACCACCCCATTTCATCCAAGATCACCATATGCCGCGTCAAAATGCGCGGCGCATTGGTACACTGTTAATTACAGGGAGGCTTATGGGCTG TTTGCTTGCAATGGGATTTTATTCAATCACGAATCTCCTCGTCGCGGGGAGAATTTTGTAACCCGAAAGATTACGAGGGCTCTTGGGAGAATTAAGGTGG GGTTGCAGAGTAAGTTGTATTTAGGGAATTTGCAGGCCTCGAGGGATTGGGGTTTCGCAGGGGATTACGTGGAGGCAATGTGGATGATGTTGCAGCAGGA AAAGCCTGATGATTATGTGGTTGCGACAGAGGAATCGCATACGGTGGAGGAGTTTTTGGAAGTGGCATTTGGGTATGTTGGGATGAATTGGAAGGATCAT GTTGTAATTGATAAGAAGTATTTTAGGCCTGCTGAAGTGGATAATTTGAAAGGGGATTCGAGCAAGGCGAGGAAAGTGCTTGGCTGGAAGCCTAAAGTTG GGTTTGAGCAATTGGTGAGGATGATGGTCGATGAAGATGTTGATTTAGCTAAGAGGGAGAAGGTTCTTGTTGATGCTGGTTACATCAATGCTCAGCAACA GCCTTGA
AA sequence Show only first row Show all	>Potri.005G116200.1 pacid=42802506 polypeptide=Potri.005G116200.1.p locus=Potri.005G116200 ID=Potri.005G116200.1.v4.1 annot-version=v4.1 MASESDQPRSASATPVNGEIKPKIALVTGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNVHKARMKLHYADLSDASSLRRWLDTIY PDEVYNLAAQSHVAVSFEVPDYTADVVATGTVRLLEAVRSHIAATGRSHVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGL FACNGILFNHESPRRGENFVTRKITRALGRIKVGLQSKLYLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGMNWKDH VVIDKKYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVRMMVDEDVDLAKREKVLVDAGYINAQQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.005G116200 [exp]	0	1	GMD1.2
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.001G131400 [exp]	2.64	0.8790
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.017G050300 [exp]	5.47	0.8659
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.010G025300 [exp]	7.41	0.8442
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.008G220400 [exp]	11.70	0.8195	Pt-MFP2.3
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	12.92	0.8962
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	13.63	0.8558	COMT1,Pt-OMT1.2
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	15.16	0.8956	GAPDH1.4
AT5G26330			Cupredoxin superfamily protein...		Potri.002G156401 [exp]	22.18	0.7993
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	22.44	0.8873
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	23.87	0.8798

Compare expression of checked genes

Potri.005G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.