Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 326 / 5e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 149 / 3e-38 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 122 / 2e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G34110 86 / 4e-17 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 82 / 7e-16 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 79 / 5e-15 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G36660 72 / 1e-12 PAB7 poly(A) binding protein 7 (.1) AT4G16280 69 / 5e-12 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 68 / 2e-11 flowering time control protein-related / FCA gamma-related (.1) AT3G16380 66 / 6e-11 PAB6 poly(A) binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G014100 [exp] 1055 / 0 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 363 / 2e-113 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 360 / 4e-112 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 156 / 1e-40 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 152 / 4e-39 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 136 / 1e-33 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 135 / 1e-33 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G178200 [exp] 135 / 1e-33 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.014G104500 [exp] 134 / 4e-33 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033990 [exp] 606 / 0 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 590 / 0 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 353 / 1e-109 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021351 [exp] 142 / 7e-36 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 141 / 1e-35 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 139 / 8e-35 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043390 [exp] 129 / 8e-32 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 127 / 5e-31 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017026 [exp] 86 / 3e-17 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002835 [exp] 86 / 7e-17 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G116400.1 pacid=42804490 polypeptide=Potri.005G116400.1.p locus=Potri.005G116400 ID=Potri.005G116400.1.v4.1 annot-version=v4.1 ATGAAAGCTACAAAAGCAGCAGCAACTAAGAAAACACCGGCGGGAAGGAAACCTGCCGCTGCCAAAGCCGCTCGTGATTCTGCCACAGAGGAGACACCGG TTCCAAAAACCCCAGGCAACGCCAAGCAGACACAAAATAACGACATGATACCGTTGCCAATTACCGGTTCTGATTCAAAACTTGAACAATCACCAGTTGA AGGAACAAATGTACATATGGACGTGAGCATGGCGACGCTGGAAACTACGAAGCCACTTCCGATTAAGAAGAAGGTTGTGAGGAGAGTGGTGAAGGTGGTG AAGAAAACTCCTGCCAATGCAAAAGTTCTTTCAGAACAAGCACCAAAAACTGTGATTGCCACAAAGTCTAAGGTTGAAGAAAGCTCAAAGGAGGAGGAAC TTGCTGCTGAGAATGTTGGAGAATCCTTAAAGAAGGAAGAAGTTACGATGAAAGTGGAAAATACTAAGGTTGAAAGTGTTGCTGTCTCTGTACAGGAGGA GGAAGGTGTGGAAGAGCCTGTACTCGATTCTAGCAAGGATGATGGAGCTATTAGTGATTTGGTTTGGGACTCTGTGACAAAGAAACAAACTGCTGTGGAA GAGCTTGTGAAAGTATCTAGGAACGGAGAACCTGACAATGGGGGAAAGGGGGTGGATGTTAAGGAGGATGAGAGGAAAGACATGGATGATGAAGTAAAGC CCATAAACGAGGCTGTTAAGATGGAAGAGACTTTGAAGGATGAGGTTCGGAGAGAAGAGGCGCAGCCCGAGCAAGATGAGTATGGTGGGGATGATGGATA TGAGGAGTATGGAGATCGAGTGGATTTTGAAGATCCTGGTGAGGATGACTTTGAAGATCCAGATGAGCCTGCTGAGGAAGCTGATGCAATGGAAGACGAA CGCAGGGAACTAACAGCTGTTGCTAAGGAGCGTAAGATTAAGAAAGAGTATGAGATATTTGTTGGTGGGTTGGATAGGGATGCTACTGAGGAGGATTTGA GAAAGGTTTTTGAGAAGATTGGTGAAGTGGTTGAAGTTCGATTACACAAGAATCTTTCAACGAATAGGAATAAAGGATACGCGTTTGTGAAATTTGCAAG CAAGGAGCATGTGAAGCGCGCTTTGTCAGAAATGAAAAACCCTGTGATTCGTGGAAAGCGATGTGGGACAGCACCAAGTGAGGACAATGATACATTGTTC TTGGGAAATATATGCAACACATGGACAAAGGAAGCTATAAGGCAAAAGTTGAAGGATTATGGTGTTGAAGGTGTTGAGAACATCACTGTTGTCTCAGATG CTCAACATGAAGGGAGAAGTCGTGGTTTTGCATTTCTTGAGTTCGCATGTCATGCTGATGCAATGCTTGCATACAAGAGGCTTCAGAAGCCTGATGTTGT ATTTGGCCATCCAGAGAGAACTGCTAAAGTGGCATTTGCTGAACCTATACGTGAGCCTGACCCTGAAATTATGGCTCAGGTTAAGACTATATTTCTTGAT GGCCTTCCCCCACACTGGGATGAAGACCGTGTTAGGGAGTGCTTGAAAGGTTATGGAGAGATTGTGAGAGTTGTCCTAGCACGAAATATGTCAACTGCCA AGAGAAAGGATTTTGGATTTGTTGATTTCTCTACGCATGATGATGCTGTTGCTTGTATTGAGGGAATAAATAATAGAGAATTTGGTAATGGTAACACAAA GACGAGAGTTAAAGCAAGGCTGTCAAATCCATTGCCGAAAACTCAGGCTGTGAAGGGTGGAATGTGTGGTGGCTTTCGAATTGGTCATTCTGGAAGTGGA AACTTTTCAAGATTTGGAAGGGGTTTTGGGCGTGGTGGACGTCACTCCAACTGGGCAAATTTCCAACGTGGCAGGGGTTTCTATCAACGAGGACGTGGTC AAACTAGTAGAATGGTTCCTCATGAGTATGACTATAATGATCGTTATGACATGCTTCATGGGAGGCAAGGAGGGAGAAGGGGTACTTTCAGAGGAGGTTA TCACACAGCTGGTAGAGGTATGACTGCTGGGCCATCAAGATCTAATATGAATAGAGCTTGGCATGATATCCCTGAGCGAGGACACAGGGACCATGTTTCT TCAAGGAGGCAACCATTTTCTCCTGAAGAAGCCTTTGACCGACGTTTTGTTGGAAGGCACTTTGATGACCCCTATTTTTATGATGATGGACCACATGGGA TGAAGCGGCCATTTTACATGACTGACCAAGATCCTGATTACATGGAACCTAGTAGGCTTCGACCCCGGTTAGATTACTCTGATCCTCGATTAGATTATGC TGATCCAGCAGCTTCATTTCGTGGGACACATTATCGTGATGCATATGGAGCAGGCAGTGAACCCTACTTTCATGAATATCGTGGTTCTGATTATGCTTCA TATCCACCTTATTATGGGAGCGACCATTCATATGGCGGTGGTTACCGCTATTAG
AA sequence Show only first row Show all	>Potri.005G116400.1 pacid=42804490 polypeptide=Potri.005G116400.1.p locus=Potri.005G116400 ID=Potri.005G116400.1.v4.1 annot-version=v4.1 MKATKAAATKKTPAGRKPAAAKAARDSATEETPVPKTPGNAKQTQNNDMIPLPITGSDSKLEQSPVEGTNVHMDVSMATLETTKPLPIKKKVVRRVVKVV KKTPANAKVLSEQAPKTVIATKSKVEESSKEEELAAENVGESLKKEEVTMKVENTKVESVAVSVQEEEGVEEPVLDSSKDDGAISDLVWDSVTKKQTAVE ELVKVSRNGEPDNGGKGVDVKEDERKDMDDEVKPINEAVKMEETLKDEVRREEAQPEQDEYGGDDGYEEYGDRVDFEDPGEDDFEDPDEPAEEADAMEDE RRELTAVAKERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSEMKNPVIRGKRCGTAPSEDNDTLF LGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMAQVKTIFLD GLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACIEGINNREFGNGNTKTRVKARLSNPLPKTQAVKGGMCGGFRIGHSGSG NFSRFGRGFGRGGRHSNWANFQRGRGFYQRGRGQTSRMVPHEYDYNDRYDMLHGRQGGRRGTFRGGYHTAGRGMTAGPSRSNMNRAWHDIPERGHRDHVS SRRQPFSPEEAFDRRFVGRHFDDPYFYDDGPHGMKRPFYMTDQDPDYMEPSRLRPRLDYSDPRLDYADPAASFRGTHYRDAYGAGSEPYFHEYRGSDYAS YPPYYGSDHSYGGGYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	0	1
AT5G13950			unknown protein		Potri.014G144100 [exp]	1.00	0.9016
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	2.23	0.8833
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	4.89	0.8925
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	6.78	0.8926
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	7.74	0.8646
AT5G13950			unknown protein		Potri.002G237800 [exp]	8.71	0.8909
AT1G17820			Putative integral membrane pro...		Potri.017G155000 [exp]	10.48	0.8515
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	11.22	0.8697
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	11.31	0.8776
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	13.63	0.8803

Compare expression of checked genes

Potri.005G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.