Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51150 668 / 0 ATP binding microtubule motor family protein (.1.2) AT5G66310 654 / 0 ATP binding microtubule motor family protein (.1) AT2G21300 602 / 0 ATP binding microtubule motor family protein (.1.2) AT4G24170 591 / 0 ATP binding microtubule motor family protein (.1) AT4G38950 587 / 0 ATP binding microtubule motor family protein (.1.2) AT1G18370 468 / 6e-149 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 447 / 4e-141 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 392 / 2e-119 ATP binding microtubule motor family protein (.1) AT3G10180 290 / 9e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 278 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G014800 [exp] 1594 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.004G162800 [exp] 854 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 836 / 0 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G027600 [exp] 627 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 478 / 6e-153 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 456 / 2e-144 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 449 / 9e-142 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 288 / 5e-81 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 275 / 2e-78 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031086 [exp] 798 / 0 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 714 / 0 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 709 / 0 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10035471 [exp] 597 / 0 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 582 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 575 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 563 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10005181 [exp] 466 / 2e-148 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 462 / 8e-147 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 460 / 1e-141 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0023 [poplar] [flax] PF11995 [poplar] [flax] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Potri.005G116900.3 pacid=42803353 polypeptide=Potri.005G116900.3.p locus=Potri.005G116900 ID=Potri.005G116900.3.v4.1 annot-version=v4.1 ATGGGGGCAGCTGATGCGGATGGGCCAATGCACGGGCTGAGTGGTGGTGGTGAGGAGAAAATTTTTGTTTCAGTTCGGCTGCGGCCTTTGAATGCGAAGG AAATCGCAAGGAATGATGTATCAGATTGGGAATCCATCAATTATGACACTGTCATATACAGGAATAACCTTCCAGTGTCTGAGCGGTCCATGTACCCAAC AGCTTATACATTTGATAGAGTATTTGGGTCTGATTGCTCCACTAAGCATGTATATGGAGAAGGAGCCAAGGAAGTTGCTCTTTCAGTCGTCAGTGGTATA AACTCAAGTGTATTTGCATATGGGCAAACGAGTAGTGGAAAAACGTACACTATGAGTGGAATTACTGAGTACACTATAGCAGATATATATGACTATGTGG AGAAGCACAAGGAAAGAGAGTTTACTTTGAAATTCTCTGCCATGGAGATTTACAACGAATCCGTCAGAGACCTCCTTGGTGCAGATGCAACTCCACTCCG ACTTCTAGATGATCCAGAGAGAGGCACTGTTGTGGAGAGGCTCACAGAGGAATCTATAAGGGACTGGAATCATTTTAAAGAACTTCTATCTGTATGTGAA GCTCAGAGACAAATAGGGGAGACCTCTCTTAATGAAGCAAGCTCTAGATCTCATCAGATTCTGAGACTGACAGTTGAAAGTTCCACACAGGAGTTTTTAG GCCATTACAAGTCCAGCACTCTTGCTGCCACGGTGAATTTTGTTGATCTAGCAGGAAGTGAGCGTGCTTCTCAATCATTATCAGCTGGCATGAGGTTGAA AGAAGGGTGTCACATAAATCGTAGTCTACTGACGTTGGGAACTGTTATCCGTAAGCTAAGCAAAGGAAAAAATGGACATGTTCCTTTCAGAGATTCGAAG CTGACTCGAATATTGCAGTCCTCTTTAGGAGGCAATGCTAGGACTGCCATCATATGTACCATGAGCCCTGCACGAAGCCATGTTGAACAATCTAGAAACA CACTGCTGTTTGCTAGTTGCGCTAAAGAAGTGACAACCAATGCGCAGGTCAATGTAGTTGTCTCTGATAAAACACTGGTGAAGCAACTGCAAAGAGAATT GGCTAGAATGGAGAATGAGTTGAAAAATACACGACCAGATTCTGTCACATCAGATTCCACTATAGTACTGAGAGAGAAGGACCTTCAGATTGAAAAGCTA ATGAATGAGGTTGCAGAGCTGACTCGGCGACTTGATCTTGCTCAGTCACAGATTGAGAATCTACAGCAAGTGTCTGAAGGCAGCAGATCTTCAACAGTAT GGGCAGATCCAGATCATCACTACAATAAATTGCGAGTGCGAAATTCATTCAGAACTGACAATTCAGTATCATATTCACTCATTTTGGAAGATCCTCCCTC CCTGGATCTCGGTGCCAGGTCTTTTGATGCATCTCAATGTTCAGATGTGCAAAGTAGCCGAAGTTCTGGAGCAAACTTCATCCAATTCCCAGTTTTTGAA GAGAATTTCCTTCCAGAAAGTTTCTCTACACACCACTCAACTAGCACCACTAATTTTGTAGGAAATGATCTGCATGAGAAAAAGGATGCTGACGGACAAA CTAATCAAAACTTTGATGATAATTGGAAGGAAGTTCAATGCATTGAAGTGGAGGAGTCGAGCGTAAGCCAATATTCAAATTCAAACACATCAGAGTCTAG GCCATACAGATTTGAGGAGTCTAATATGCCTTCTCCGGATACAAAAACAGATACCTTGGGTTTAACAAAGGTCGGGAATGAAGAAAGAACAAATCAAGAA GTAAAGTCACCCCCGTTGAAAGAACAGAAAGAGTTGAATGGTTTGCAATCCACTTTTATAATACCATCTCCTGAAAAGCTTTCTCCATGGCTGCTGGAAG CAGGCCTTTCTGAATCAAGAAGCTTTTTGAGCAGGAGTAGAAGTTGTAGAGCAACGCTTATGGATAACTCACCAGGTTTCTGTTTCAAGAAGGTGGAAGC GTATGAGAGCACACCACTGTTTGGGTTTGAGAAAGACTTTCCCGGAAGACCTGAGGGTTTTCAAAGGAAACTTCCTGCATTGAAGTATGATCCTGACATT GAAAGGTTATCAAGAAATGTCTCTCGGAATTCTATTTGTAGTTCTGCTGTTAATGAGCTCAAAGAGGAAAGTGGTGGAACTTCAACTGATTGGAGGACTG CCAGTGTTGGTAACTCAGATATGGGTCTGATGTACATGGCTGATTATTTGGAACAAGAAACAACCGCGGAGGATGCAGAGAATATAGGAGATGATGGCTT GGATGCAACACAACATAATATGTCTGCAAAGAAGGTAAAAGATGTTGGCTTGGATTCAATTTGTTATAATGTGTCAGCAAAGAGTGTTAAAGATGTTGGC TTGGATCCAATTCAAGACGGTGCCTCAGCAAAGAATGTAAAAGATGTTGGCTTGGATCCAATTCAAGATGGTGTGTCAGCAAAGAATGTAAAAGATGTTG GCTTGGATCCTATCCAAGATGACGCAGAAAGTGCTTCAAAATGGCCATTAGAATTCAAGAATATGCAAAGCAAGATTATCGAACTTTGGCATGCATGCAG TGTCTCACTGGTCCACAGGACCCACTTCCTCCTGCTATTTAAGGGTGATCCTGCAGATTCTTTTTACCTGGAGGTAGAGATTAGGAGAATGTCCCTTCTA AAGGAAACATTATCAAGGGGTAGCAGAACTATTGTTCACGGACAAGTTCTAACATCTACCTCAAGCAAGAAGGCTTTGAGTCATGAGAGGCAGATGCTGG CAAGGGAAATGCAGAAGAGGCTCACTAGAGAAGAAAGAGAGAATCTTTTCCTAAAATGGGGTGTTCCATTGAGCGGAAACAATAGAAGGTTGCAGCTGGT ACATCGCTTATGGACCAAGACAACAGATATGGACCACATCACAGAAAGTGCCGCTCTTGTAGCAAAGCTAGTTGGTTTTATAGAGCAAGAGCAGGCTTTG AAGGAGATGTTTGGGCTGCTCAATTTTACACCAACATATCCTAGCAGGAGGAAATCTTCTATTTGGAAGCGCAGCGTTTTATCCTTCTTGTAA
AA sequence Show only first row Show all	>Potri.005G116900.3 pacid=42803353 polypeptide=Potri.005G116900.3.p locus=Potri.005G116900 ID=Potri.005G116900.3.v4.1 annot-version=v4.1 MGAADADGPMHGLSGGGEEKIFVSVRLRPLNAKEIARNDVSDWESINYDTVIYRNNLPVSERSMYPTAYTFDRVFGSDCSTKHVYGEGAKEVALSVVSGI NSSVFAYGQTSSGKTYTMSGITEYTIADIYDYVEKHKEREFTLKFSAMEIYNESVRDLLGADATPLRLLDDPERGTVVERLTEESIRDWNHFKELLSVCE AQRQIGETSLNEASSRSHQILRLTVESSTQEFLGHYKSSTLAATVNFVDLAGSERASQSLSAGMRLKEGCHINRSLLTLGTVIRKLSKGKNGHVPFRDSK LTRILQSSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVVSDKTLVKQLQRELARMENELKNTRPDSVTSDSTIVLREKDLQIEKL MNEVAELTRRLDLAQSQIENLQQVSEGSRSSTVWADPDHHYNKLRVRNSFRTDNSVSYSLILEDPPSLDLGARSFDASQCSDVQSSRSSGANFIQFPVFE ENFLPESFSTHHSTSTTNFVGNDLHEKKDADGQTNQNFDDNWKEVQCIEVEESSVSQYSNSNTSESRPYRFEESNMPSPDTKTDTLGLTKVGNEERTNQE VKSPPLKEQKELNGLQSTFIIPSPEKLSPWLLEAGLSESRSFLSRSRSCRATLMDNSPGFCFKKVEAYESTPLFGFEKDFPGRPEGFQRKLPALKYDPDI ERLSRNVSRNSICSSAVNELKEESGGTSTDWRTASVGNSDMGLMYMADYLEQETTAEDAENIGDDGLDATQHNMSAKKVKDVGLDSICYNVSAKSVKDVG LDPIQDGASAKNVKDVGLDPIQDGVSAKNVKDVGLDPIQDDAESASKWPLEFKNMQSKIIELWHACSVSLVHRTHFLLLFKGDPADSFYLEVEIRRMSLL KETLSRGSRTIVHGQVLTSTSSKKALSHERQMLAREMQKRLTREERENLFLKWGVPLSGNNRRLQLVHRLWTKTTDMDHITESAALVAKLVGFIEQEQAL KEMFGLLNFTPTYPSRRKSSIWKRSVLSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51150			ATP binding microtubule motor ...		Potri.005G116900 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	1.41	0.9718
AT4G34215			Domain of unknown function (DU...		Potri.014G022700 [exp]	3.16	0.9586
AT5G43150			unknown protein		Potri.010G088200 [exp]	4.58	0.9295
AT5G42690			Protein of unknown function, D...		Potri.014G034800 [exp]	6.32	0.9017
					Potri.013G151333 [exp]	6.48	0.9117
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	8.36	0.9370	Pt-FLA14.16
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	9.48	0.9340
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G123200 [exp]	10.00	0.9380	FLA14.13
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	10.48	0.9166
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	12.24	0.8912

Compare expression of checked genes

Potri.005G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.