Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51130 711 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015800 [exp] 783 / 0 AT3G51130 706 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025972 [exp] 724 / 0 AT3G51130 704 / 0.0 unknown protein Lus10014270 [exp] 722 / 0 AT3G51130 701 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03676 [poplar] [flax] UPF0183 Uncharacterised protein family (UPF0183)
Representative CDS sequence Show only first row Show all	>Potri.005G117200.1 pacid=42802549 polypeptide=Potri.005G117200.1.p locus=Potri.005G117200 ID=Potri.005G117200.1.v4.1 annot-version=v4.1 ATGTTACACCACCACCACAATCACCACCAGTCACAGCGACCGCGACGCCGCTGTGAAGGCACTGCTATGGGCGTTATCATTCTCGATCTCCGCCCTGGTA ACGGCATCGGTCCTTTCTCTCTGGGGATGCCAATATGTGAAGCATTTGCACAGATTGAACAACAACCTAGCATATACGACGTCGTTCATGTGAAGTACTT CGATGAGGAGCCATTAAAACTTGATATTGTTATCAGCTTTCCTGATCATGGGTTTCATCTTCGATTCGATCCGTGGTCACAAAGGTTACGATTGATTGAG ATTTTCGATGTGAAACGTCTTCAAATGCGCTACGCTACATCTCTTATTGGGGGACCATCAAATCTAGCTACTTTTGTTGCTGTATATGCGCTTTTTGGAC CTACATTTCCTGGGATTTACGACAAAGATAGAGGCGTGTACACTTTGTTTTACCCAGGTTTGTCATTTGCTTTTCCGATTCCCAGCCAGTATACAGATTG TTTTCATGGTAGAGAAGCGGAACTGCCACTAGAGTTTCCAGATGGCACTACACCAGTTACATGTCGAGTCTCTATATATGATGGTTCTGCGGATAAAAAA GTAGGTGTTGGATCTTTAATGCATAAGGCTTCTGCACCTCCATTACTTCCTGGTAACCTGTATATGGAAGAGGTGCATGTTAAGCTTGGGGAAGAATTAT ATTTCTCTGTTGGAGGGCAGCATATTCCTTTTGGTGCATCACCACAGGATGTATGGACAGAATTAGGTCGTCCATGTGGAATTCATCAAAAGCAGGTTGA CCAAATGGTCATTCACTCTGCTTCTGACCTTCGCCCGAGGACAACCCTTTGTGGAGACTACTTTTACAATTACTTCACTCGTGGTCTGGATATCTTATTT GATGGACAGACTCATAGAATCAAAAAGTTTGTTTTGCACACAAACTATCCTGGTCATGCAGATTTCAATTCGTACATCAAGTGCAATTTTGTCATCCAAG GTTCTGACTTTGACAACTCCAAACAGAGTATTACACCAAGCACAAAATGGGACCAGGTGAAGGAGATCCTTGGGGACTGTGGTCGAGCAGCTATTCAAAC ACAGGGATCTACAAGCAATCCTTTTGGTTCCACTTTTGTATATGGTTATCAGAACATTGCCTTCGAGGTGATGAAGAATGGTTATATTGCAACTGTAACT CTCTTCCAGTCATGA
AA sequence Show only first row Show all	>Potri.005G117200.1 pacid=42802549 polypeptide=Potri.005G117200.1.p locus=Potri.005G117200 ID=Potri.005G117200.1.v4.1 annot-version=v4.1 MLHHHHNHHQSQRPRRRCEGTAMGVIILDLRPGNGIGPFSLGMPICEAFAQIEQQPSIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIE IFDVKRLQMRYATSLIGGPSNLATFVAVYALFGPTFPGIYDKDRGVYTLFYPGLSFAFPIPSQYTDCFHGREAELPLEFPDGTTPVTCRVSIYDGSADKK VGVGSLMHKASAPPLLPGNLYMEEVHVKLGEELYFSVGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDLRPRTTLCGDYFYNYFTRGLDILF DGQTHRIKKFVLHTNYPGHADFNSYIKCNFVIQGSDFDNSKQSITPSTKWDQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYIATVT LFQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51130			unknown protein		Potri.005G117200 [exp]	0	1
AT5G67140			F-box/RNI-like superfamily pro...		Potri.005G140000 [exp]	1.41	0.8273
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Potri.008G157500 [exp]	3.46	0.7924
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	4.24	0.8060
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.001G167200 [exp]	6.32	0.7315
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	8.71	0.7319
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	13.96	0.7363
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	15.49	0.7358
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.001G442400 [exp]	16.43	0.7799	LSD1.1
AT1G44770			unknown protein		Potri.005G176500 [exp]	18.33	0.7462
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.009G113400 [exp]	18.57	0.7165

Compare expression of checked genes

Potri.005G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.