Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16485 692 / 0 nucleic acid binding;zinc ion binding;DNA binding (.1) AT3G51120 679 / 0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G18090 394 / 9e-119 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G63700 219 / 3e-60 zinc ion binding;DNA binding (.1) AT5G08430 193 / 5e-52 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 91 / 4e-18 SWIB/MDM2 domain;Plus-3;GYF (.1) AT4G34290 51 / 5e-07 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 50 / 7e-07 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 49 / 2e-06 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 51 / 6e-06 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016000 [exp] 2544 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 786 / 0 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 755 / 0 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 253 / 2e-69 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 240 / 5e-68 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 193 / 1e-51 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.005G134500 [exp] 52 / 2e-06 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 49 / 2e-06 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 48 / 5e-06 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014271 [exp] 814 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 707 / 0 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 690 / 0 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10025973 [exp] 596 / 0 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 497 / 4e-152 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 491 / 2e-148 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10020897 [exp] 88 / 2e-17 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10019640 [exp] 52 / 3e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 52 / 3e-06 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10002106 [exp] 46 / 5e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.005G117300.1 pacid=42804524 polypeptide=Potri.005G117300.1.p locus=Potri.005G117300 ID=Potri.005G117300.1.v4.1 annot-version=v4.1 ATGCGACAACAGCAAGAAGACTACAGACCTTCCATTCCAGATGGGACCGAAGAAGATGCGCCTAAACTTTTTGATAATTCCTTACCGATTTCTGATCCTA TGAGCATCGATCAATGCGAAACAATTCCACAAATGGATGGTTCACAGCTCCTTGGAGCTCCAGTCACGGCAGCTACTTCTGACGTGGACTTGTCTGAGAG AGAATCAGTACATACCGTGCCCGTCGTAGAGGTTACAAATGACTCGAAAATTGCGGAAATCATTACGGGCAAGCGAAAGCGAGGTCGGCCGCCTAAAATT CAAGGGAAATTAGGGCCGCCTGCTTTCTCTGCGCAGAGGAAGAAGAAAGATGAAGAAGATGTTTGTTTTATTTGTTTTGATGGTGGTAGTCTTGTTCTTT GTGATCGCCGGGGTTGTCCGAAGGCATACCATGCGGCTTGTATCAAAAGGGATGAGGCATTTTTTCGATCGAAGGCTAAATGGAACTGTGGGTGGCATAT TTGCAGCAGTTGTCAGAAGGCTTCACATTATATGTGTTACACATGTACATACTCTTTGTGCAAAGGATGTACAAAAGATGCTGATTATTTATGTGTCCAA GGGAATAAAGGATTTTGTGGTGCATGCATGAGAACTATAATGCTGATTGAAAATATTGCAACAGGAAATCAGGAGATGGTTCAAGTGGATTTTGATGACA CAACTAGCTGGGAGTATCTCTTCAAGGTCTACTGGATTTACTTAAAAGCAAAGCTATCTTTAACAGTAGATGAGCTAATTAAGGCTAAAAATCCTTGGAA AGGAGATGAGCTACCTAAAGCTAAAAACTCCTGGATTGGAGCTGGTGCGATGGCTCATAAGCAGGAGCCACCAGGTGAATTTTGGCACGGTAATGATAAT AAAGGCTCCTTTTCAAACAGCTACTGTGGAAATGTGGAAGCGATTCATGCCAAGAGAAGAAAAATGGACCGAACAAAGTTGCACACTGAGGAAAACTCTC TTTTTATGGAAAAATCATGTGTTGACAAAGTCACGCATCTGCCTGAAGGCACATTGTGGGCAACAAAGGGGCTCTTGGAGTTTGTTTCACACATGAAAAA TGGGGATATGTCTGTGCTTTCTAAGTTTGATGTCCAGAGTCTTCTGCTAGAATATGTAAAAAGAAACAATCTTCGTGATCCTCGCCAGAAAAGTCACATT GTTTGTGATTCAAGGCTTATAAAGCTCTTTGGAAAAGAACATGTAGGTCATTTTGAAATGCTGAAGCTTCTTGATTACCACTTTCTTGTAAAAGAAGAAT CTCCAGCAGATGATGAAACTGCTGCAATGAGAATTTCTGATGCTGTTGGTGGCCAGGTTGAGGCTGTCAGAAATAATGACAGTCAACTAATGTCAGGTAG TGATCGAAGGCATAAAACACGTAAAAGGACAGATGAGAGAGGACCACAGATTAATTCTAATCCAGAGGAATATGCAGCAATTGATGTTCACAATATTAGC TTGCTCTACTTAAAGCGTAGTTTGATGGAGAACTTAATGGATGATGCTGGAAAATTTCATGAAAAGGTTGTTGGATCTTTTGTGCGAATCAGGACTTCTG GTGGTGATCAAAAGGAAGATTCGTATAGGCTTGTCCAAGTTGTAGGTACCAATAAGGTTGCTGAATCATATAAATTCGGCACAAGAACAACTGATATCAT GCTTGAAATATTAAATTTAGATAAGAAGGAGGTCATATCAATTGATGGGATTTCAAACCAGGAGTTCTCAGAGGATGAATGCAAACGCTTAAGTCAGAGT ATAAAATGTGGGCTTATCAAACCGTTTACAGTGGGTGAGATACAGAAGAGGGCTATGGTGATTCAGGATGTCAAAGTTTGTGATCATCTGGAAGCAGACA TATTAAGGCTTAATCATCTTCGTGACCGAGCTAGTGAAAAAGGGCATAGGAAAGAGCTTAGAGAATGCGTGGAGAAATTAGAGATTCTTAAGTCACCTGA AGAACGTCAGCGCAGGTTGCTTGAGATTCCCTATGTACATACTGATCTAAATATCAACTCAAGTTATGAATCTGAAGAAGATGCTGGAGTTTCACACAAG AAGATACAAGGTGACCATGCAAGAACAAGAAATGCTAGTGCTGGTAGAAATGGAGCAGAATTCAACTCTAGTGACATAGGAAACAGTCCACAGAATTCAG CATTCTCTACCGAACAGAGTAGAGATATATGCACAACATTTCATGTGGATAGAGATGGCACTACCCTGGTTCATGAGAGATTGAGCGAGTCCATGCAGAG TCAAGGAGGAGAACATATTGGGCTGAATGGGCAGAATACATCAAAGAACAGGGCAGCTTCTACTGGTTTGATGACTGGTGATTGGAATAGTGAAGCAGCT GTACAATGTGGATCGGATCCTGGGGTTGCATCACGAAATATACCACCTCCTCTTTCTACAGGAAGAGAGCAATTGGTTGATATTGAGACAGACAAACTGT GGCACTATCAGGATCCAACTGGAAAAACTCAAGGGCCATTTGCTATGGCCCAACTGCGTAAATGGAGTACAAGTGGGCTTTTCCCTCATGATTTGAGAGT GTGGAAGATAAATGAGAAACCAGATGACTCAATTCTTTTGACCAATGCATTGGTTGGGCGATTCCATAAAGAGCCAGCATTGTCCCATAACCGCTCCTCA CTGGCTCAAGAAGCAACAGTTTCTTCTGATAAAGATAAAATGCATGAATTTGGTATGAATCAGAGTATTGATGCTGTTCAGTTAGACAATAAAAATATAA ACAACTGGAAGTCAGTGCAAAACAATGCAAGTGCCAATTGTAATGATGATGATGAGTTTCTAGGAAGCAATGCATGGGATGCCCATTCTTCAAGTTGGAC TACATCTATGAATGCCACCATTCCTAACAATGGACAAGCGCAACTTGCTCTACAACTTTTGGAATTGTCCAAGGGCTGCAAGGCTTCGTCTAATCAATCC AATATGTGTAATTCACTTTCCTTGTTTCCGTCTTCTGGAAAGCTCGGTGAAACTCCATCACTTCAGGTAAAGGAAGAACACGAGGATGAAAAACGGATTT ATGATCTGAGTGATGTAAATGGGAATTCACTCAAAACCCCTGAAGGTAAAAATAATATTGGCAAAAGTGATGATAGACAGGCTGATAGTGAGAGTTATTC AAACCAGTCTTCTGGACAGAACTGGAGACCCCCTGTAAAAAGTTCAAGCGGATGGGATTCCAACTCTACTTTGGTTTCTGGGACGAAGTCTGTTGAAACA TCGCAGAAGAATGAGGAAATGGAGTTCTTTGATTTGCCCTGTCCAACACCGAAGCAGCAACTTGAGGATTTGCAAGGACAGGCTGTTGAAAACAACCACA CTACTTCAAAGCTTCCTGTTCTAGATTCAGGACCTTGCTGGAGTACTGCTTCCAGTTTAGCGGTTGGTGGAGCACAGCTAGCTGGAGTAGCCAGTGAATG GGGCGGCTATTCGCCAGCTCCTGTTAAATCTGTTGAGGAATGGGACTCCAATCATGTGTCCACCTCTTCACTGAAACCTACAGATGGGGGCAGTGATCAT GCTGCTACACTGACTCCAGATAGTGGCCAATTGACACACACTCCCCCCACCCACCCAGTGATTGATGCACCTGATTGGCAGCCCATCATTCCTGAACCTG CTGAGTTCTGCTCTTTAGTTGATGAATCTGTTTCAGACCTATTGGCAGAAGTTGAAGCGATGGAGTCTCTTGGTGGTTTGCCTTCCCCAACTTCGAAATT GTGCTCTGCTGGGGAATTGACACGAGGGTATGATGATGATTGCTTTAGTCCTGTTGAGGAGTTTAGCCCAGCACCTGATCCAGGCAAAAGTGATGCATTC AGCTCCACTGCTGATATACAAATCCCTTCTCAGCTGACTGTAGTGAGTGAAGCACTGTTGTTATGTCACATGCCTTCTCGACCTACTGTAATAGATAAAC CACTTGGTGTATCTCTAATGCCTTCTCAGTTGACAGTAGCCAATGAATCACATCAGATATCTTGCACGCCTTCTCAGTCAACTATTACAGATGAACCACT AGAGAAATCTCAAAGGCCTTCTCAATCGACTTTGACAGATGAACCACTTGGTTTATCACAGACAGATGCTCCGAATCCTCAAAAGAGCTTCAGTGAACAT TCTTCTACAAGTCCTGAGGTGGAAGGTAATATGAAGCCAAAAGATGTATCAGTTAACCAACGGGTAAGAGGTTCAGAAACACAGCCTCCCGCGTCATCAG CTGGTAACCAGGGAGAATCAGGTTCAGATATCCAACCTACTACTCCATCCACGGTTAGTGAATTGGAAGCAGGTTCCGATCTTCAACAACCTTCACCATC CAACAAAGATGCTAGTCGGGGAACAGTAAAGGGAAGAGTAGCACAAGGAAATACGAACATGGTTTGGGGAAATGGTCATGGCACAATTCAGCAACATGCC AAGACGAGTGCAGCCAATTCTACAGGCAAATCAGGCAGTTGGGGAAGCCAACCAAGGTATGGTGGGGACAGATTTTCTGGTCCAAGAGACCACCGTAATC ATTTCCAAAGCAGAGAGAGAGATTCAGGTTTTGGTAGGGATAGGTCTTCATGGAACAAGCAGCCATTATGTGGTGATGGAAATGGAGCTAGTACATATAG ACCCCCGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGCGGATACTGCAAGAAGGGAGCATCATGTAGTTATTGGCACCCATGA
AA sequence Show only first row Show all	>Potri.005G117300.1 pacid=42804524 polypeptide=Potri.005G117300.1.p locus=Potri.005G117300 ID=Potri.005G117300.1.v4.1 annot-version=v4.1 MRQQQEDYRPSIPDGTEEDAPKLFDNSLPISDPMSIDQCETIPQMDGSQLLGAPVTAATSDVDLSERESVHTVPVVEVTNDSKIAEIITGKRKRGRPPKI QGKLGPPAFSAQRKKKDEEDVCFICFDGGSLVLCDRRGCPKAYHAACIKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCTKDADYLCVQ GNKGFCGACMRTIMLIENIATGNQEMVQVDFDDTTSWEYLFKVYWIYLKAKLSLTVDELIKAKNPWKGDELPKAKNSWIGAGAMAHKQEPPGEFWHGNDN KGSFSNSYCGNVEAIHAKRRKMDRTKLHTEENSLFMEKSCVDKVTHLPEGTLWATKGLLEFVSHMKNGDMSVLSKFDVQSLLLEYVKRNNLRDPRQKSHI VCDSRLIKLFGKEHVGHFEMLKLLDYHFLVKEESPADDETAAMRISDAVGGQVEAVRNNDSQLMSGSDRRHKTRKRTDERGPQINSNPEEYAAIDVHNIS LLYLKRSLMENLMDDAGKFHEKVVGSFVRIRTSGGDQKEDSYRLVQVVGTNKVAESYKFGTRTTDIMLEILNLDKKEVISIDGISNQEFSEDECKRLSQS IKCGLIKPFTVGEIQKRAMVIQDVKVCDHLEADILRLNHLRDRASEKGHRKELRECVEKLEILKSPEERQRRLLEIPYVHTDLNINSSYESEEDAGVSHK KIQGDHARTRNASAGRNGAEFNSSDIGNSPQNSAFSTEQSRDICTTFHVDRDGTTLVHERLSESMQSQGGEHIGLNGQNTSKNRAASTGLMTGDWNSEAA VQCGSDPGVASRNIPPPLSTGREQLVDIETDKLWHYQDPTGKTQGPFAMAQLRKWSTSGLFPHDLRVWKINEKPDDSILLTNALVGRFHKEPALSHNRSS LAQEATVSSDKDKMHEFGMNQSIDAVQLDNKNINNWKSVQNNASANCNDDDEFLGSNAWDAHSSSWTTSMNATIPNNGQAQLALQLLELSKGCKASSNQS NMCNSLSLFPSSGKLGETPSLQVKEEHEDEKRIYDLSDVNGNSLKTPEGKNNIGKSDDRQADSESYSNQSSGQNWRPPVKSSSGWDSNSTLVSGTKSVET SQKNEEMEFFDLPCPTPKQQLEDLQGQAVENNHTTSKLPVLDSGPCWSTASSLAVGGAQLAGVASEWGGYSPAPVKSVEEWDSNHVSTSSLKPTDGGSDH AATLTPDSGQLTHTPPTHPVIDAPDWQPIIPEPAEFCSLVDESVSDLLAEVEAMESLGGLPSPTSKLCSAGELTRGYDDDCFSPVEEFSPAPDPGKSDAF SSTADIQIPSQLTVVSEALLLCHMPSRPTVIDKPLGVSLMPSQLTVANESHQISCTPSQSTITDEPLEKSQRPSQSTLTDEPLGLSQTDAPNPQKSFSEH SSTSPEVEGNMKPKDVSVNQRVRGSETQPPASSAGNQGESGSDIQPTTPSTVSELEAGSDLQQPSPSNKDASRGTVKGRVAQGNTNMVWGNGHGTIQQHA KTSAANSTGKSGSWGSQPRYGGDRFSGPRDHRNHFQSRERDSGFGRDRSSWNKQPLCGDGNGASTYRPPPKGQRVCKFYESGYCKKGASCSYWHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16485			nucleic acid binding;zinc ion ...		Potri.005G117300 [exp]	0	1
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014372 [exp]	3.87	0.8476
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	6.00	0.8224
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	7.48	0.8134
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	9.16	0.8152
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	9.53	0.8145
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	11.83	0.7912
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	12.24	0.7541
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	14.31	0.7782
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	16.79	0.7746
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	17.17	0.8197

Compare expression of checked genes

Potri.005G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.