Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FAH1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 728 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 614 / 0 Cytochrome P450 superfamily protein (.1) AT3G26310 324 / 2e-105 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 322 / 9e-105 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 318 / 6e-103 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G07990 316 / 5e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26290 315 / 6e-102 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26330 311 / 2e-100 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 308 / 5e-99 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G48280 305 / 2e-98 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016400 [exp] 895 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 649 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G082900 [exp] 366 / 1e-121 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 363 / 1e-120 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 362 / 4e-120 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084200 [exp] 361 / 6e-120 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 362 / 3e-119 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 356 / 5e-118 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 356 / 7e-118 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014273 [exp] 725 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 725 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 710 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 665 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 657 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 657 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 654 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 560 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 509 / 2e-179 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10035502 [exp] 339 / 5e-111 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G117500.1 pacid=42802745 polypeptide=Potri.005G117500.1.p locus=Potri.005G117500 ID=Potri.005G117500.1.v4.1 annot-version=v4.1 ATGGATTCTCTTCTCCAATCTTTGCAAACTTTACCCATGTCTTTCTTCTTGATCATTATCTCTTCAATTTTCTTCTTAGGTCTAATCTCTCGCCTTCGCC GGAGATCACCATATCCACCAGGGCCTAAAGGGTTTCCACTTATTGGTAGCATGCATCTGATGGACCAATTAACTCACCGTGGCTTAGCTAAACTAGCTAA ACAATATGGTGGGCTATTTCATATGCGTATGGGGTACTTGCATATGGTAGCTGTTTCATCTCCTGAAGTAGCTCGCCAAGTTTTGCAAGTCCAGGATAAC ATTTTCTCCAATAGACCAGCCAACATAGCCATAAGCTACTTAACCTATGATCGTGCCGATATGGCCTTTGCCCACTATGGTCCGTTCTGGCGCCAGATGC GTAAGCTCTGCGTCATGAAGCTATTTAGCCGGAAAAGGGCTGAATCATGGGAGTCTGTGAGAGACGAGGTGGACTCAATGGTTAAGACAGTTGAATCCAA TATAGGCAAGCCTGTGAACGTTGGAGAATTGATATTTACACTGACCATGAATATCACTTATAGAGCAGCTTTTGGGGCCAAAAATGAAGGACAAGATGAG TTCATCAAGATTTTGCAGGAGTTCTCCAAGCTTTTTGGAGCATTCAACATTTCGGATTTCATTCCTTGGCTTGGTTGGATTGACCCCCAAGGGCTCACCG CTAGACTTGTCAAGGCTCGAAAAGCACTTGATAAATTCATCGACCATATCATCGATGATCATATCCAAAAAAGAAAACAGAATAACTACTCTGAAGAGGC TGAAACCGATATGGTTGATGACATGCTAACCTTTTACAGTGAAGAGACAAAAGTAAACGAATCAGATGATTTACAAAACGCCATCAAACTTACTAGAGAC AACATCAAAGCCATCATCATGGATGTGATGTTTGGTGGGACGGAGACAGTGGCGTCGGCTATAGAGTGGGCCATGGCAGAGCTATTGAAGAGTCCAGAAG ATATAAAAAGAGTCCAGCAAGAGCTCGCCGACGTGGTTGGTTTAGAGCGGCGCGTGGAGGAAAGTGATTTTGATAAACTAACATTCTTCAAATGCACGCT TAAAGAAACCTTAAGACTTCACCCACCAATCCCACTTCTCTTACACGAAACATCTGAAGATGCTGAGGTTGCTGGTTATTACGTTCCAAAAAAGACAAGG GTCATGATCAATGCTTATGCTATTGGCAGAGACAAGAATTCATGGGAAGATCCTGATTCTTTTAAGCCTTCGAGGTTTTTGGAACCAGGGGTGCCTGATT TCAAAGGGAATCACTTCGAATTTATTCCGTTCGGGTCAGGTCGGAGGTCTTGCCCTGGCATGCAACTGGGGTTATACGCCCTTGATTTGGCTGTTGCTCA TTTGCTTCATTGTTTTACTTGGGAGTTGCCTGATGGCATGAAACCAAGTGAACTCGACATGACTGATATGTTTGGACTCACTGCGCCAAGAGCAACTCGA CTCGTTGCCGTCCCGAGAAAGCGCGTGGTCTGTCCATTTTAA
AA sequence Show only first row Show all	>Potri.005G117500.1 pacid=42802745 polypeptide=Potri.005G117500.1.p locus=Potri.005G117500 ID=Potri.005G117500.1.v4.1 annot-version=v4.1 MDSLLQSLQTLPMSFFLIIISSIFFLGLISRLRRRSPYPPGPKGFPLIGSMHLMDQLTHRGLAKLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDN IFSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRDEVDSMVKTVESNIGKPVNVGELIFTLTMNITYRAAFGAKNEGQDE FIKILQEFSKLFGAFNISDFIPWLGWIDPQGLTARLVKARKALDKFIDHIIDDHIQKRKQNNYSEEAETDMVDDMLTFYSEETKVNESDDLQNAIKLTRD NIKAIIMDVMFGGTETVASAIEWAMAELLKSPEDIKRVQQELADVVGLERRVEESDFDKLTFFKCTLKETLRLHPPIPLLLHETSEDAEVAGYYVPKKTR VMINAYAIGRDKNSWEDPDSFKPSRFLEPGVPDFKGNHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMTDMFGLTAPRATR LVAVPRKRVVCPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	0	1	FAH1.3
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	2.44	0.9224
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	3.00	0.9272	CAld5H/F5H4,Pt-FAH1.4
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	3.46	0.8972
AT5G42710			unknown protein		Potri.014G185300 [exp]	3.46	0.9131
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	4.58	0.9135
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	5.47	0.9112
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	6.48	0.9098
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G125100 [exp]	10.19	0.8148	Pt-MP2.1
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	10.58	0.8897
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	10.81	0.9010

Compare expression of checked genes

Potri.005G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.