Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 238 / 3e-67 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 238 / 4e-67 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G24240 236 / 1e-66 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G23400 228 / 3e-66 Leucine-rich repeat (LRR) family protein (.1) AT2G33170 234 / 1e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 233 / 4e-65 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 232 / 5e-65 Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 230 / 1e-64 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 223 / 8e-62 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 220 / 6e-61 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016700 [exp] 982 / 0 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 333 / 6e-105 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.019G129100 [exp] 252 / 7e-72 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 248 / 3e-70 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 248 / 3e-70 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G001000 [exp] 231 / 1e-67 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G195100 [exp] 234 / 1e-65 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 231 / 8e-65 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.005G198000 [exp] 231 / 1e-64 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005017 [exp] 228 / 6e-65 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 229 / 4e-64 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 229 / 6e-64 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023677 [exp] 229 / 7e-64 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019036 [exp] 228 / 1e-63 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 227 / 2e-63 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10035429 [exp] 226 / 4e-63 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020935 [exp] 222 / 1e-61 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 221 / 2e-61 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10033329 [exp] 221 / 3e-61 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G117700.1 pacid=42804499 polypeptide=Potri.005G117700.1.p locus=Potri.005G117700 ID=Potri.005G117700.1.v4.1 annot-version=v4.1 ATGGAGATTTCATGGCACACCAAGACCTTCTCACTTCTGCTCCTTTTCATCTTTTCTACATTAGCCCCTTCCAAGGCATGCCACCCAGTTGATAAAGAAG CATTACTTGATTTCAAACACAAAATCACAGATGACCCGTCAAAACTGTTGCTTTCTTGGACAGTTTCCTCTGATTGCTGCACTTCTTGGGAAGGCGTTGC CTGTGATGCCTCAGGCAGAGTGGTCAATGTGTCTCGTCCTGGACTTGTTTCAGACAATAATGACTTCATCGAAGACACATACATGTCAGGAACTCTGTCT CCTTCTTTGGGAAACTTGTCCAGTCTTCAACTTCTAGACCTGAGTAATCTCAAGGACTTGAAGGGACCAATACCACAAGAACTTGGCAAGTTGTCGAAGC TTACACATCTCTTTCTTGATACAAACAAGCTCACTGGATCAATACCAATTACATTAAGGTACTTCTCTCAGCTGAAAAAGATATATCTTAGTGACAATTT TTTATCTGGTATTGTTCCTCCATCTGTTATGAAATCCTGGACTTCTGTCTCGGAACTTGGTTTATCAGGAAATGCTTTGTCAGGGCCTATTCCTCCTACA ATTGGTAAGTTGGTTATGGTAACTAAGCTTGATCTACATGAAAACAACTTTACTGGTAGCATTCCCACAAGCATTGGAAATCTTAAGAATCTCAAATATC TTGATCTATCTGAGAATCAGATAGCTGGAAGCATCCCGCAGTCCATCGGTGGACTTGCTGCTTTGGAACTGCTCTATGTCAATCAAAATCACATCACAGG AAGGATACCATCTTCGATATCTGGACTTAGTTCTATGATATTCTGTCGTTTATCAGAAAACAAGTTATCAGGCAGCTTACCACCATCAATTGGCCTGCTC TCGAAGATTCAAAGACTAATCCTTGAGAACAACAAGCTCACTGGAAAACTACCTGCAACCGTGGGTCGTTTAACAACTCTTACTGATATATTTTTCTCTA ACAACTATTTTACAGGAAAGATCCCTTCAAGTTTTGTAAATTTACTTAACCTTCAAACACTTGATTTATCAAGAAACCGGCTCTCCGGCCAGCTTCCTCC TCAGCTAGCTAAGTTGAAGAGCTTACAGGCTTTAGATCTTTCATATAATCCCTTAGGACTAGTTAGAATACCAGACTGGTTCCAGGAATTAAGAGTTTTC CAGCTTATGTTGGCAAAGACTGGGATTGAAGGGGAGCTTCCTCACTGGCTATCTTCGTCATCAATATCACAACTTGACTTGTCAAGCAATGCATTAACAG GAAAGCTACCTCGGTGGATTGGTAACATGACCCGTCTTTCATTTCTCAACTTATCAAATAATGGCTTTCACTCGTCCATCCCAGTTGAATTCAAGAACCT TTCACTTCTGATGGATCTTGATATTCATTCCAACAAGTTCAGTGGCCGCTTAAATGTAATATTCTCTAAAGAAGCCCAAGACCCGCTAGGTCATTTTAAT TCCATTGATCTTTCCAGCAATATGTTCACTGGTCCAGTTGATGATGACATAGGAGAGAGACCAGCAATGGCTTCTATTCATTCATTGATTCTATCAGACA ACACATTTAGAGGACCACTACCAAAGTCAGTTGGGAAACTGGGAGAATTGCAGGTCTTGAAGCTAGTGAATACTGGGCTGTCTGGGACGATACCAGTGGA GCTTGGTGATGCCAAAGAATTGTCCACAATTTTACTTTCCAAAAATAAGCTGACTGGTGCTATTCCAGAGATTGTGCTAAATTTGAAGGAGCTAAAACAA TTTGATGTGTCTAGCAACAAACTAAGAGGCAGGATTCCTCCTCACAAAGCCATTATCCCTGCATCTGCATTCAAGAACAATCCTGGTTTGTGTGGACCTC CACTTCCACCTTGCAAACGCATTTAG
AA sequence Show only first row Show all	>Potri.005G117700.1 pacid=42804499 polypeptide=Potri.005G117700.1.p locus=Potri.005G117700 ID=Potri.005G117700.1.v4.1 annot-version=v4.1 MEISWHTKTFSLLLLFIFSTLAPSKACHPVDKEALLDFKHKITDDPSKLLLSWTVSSDCCTSWEGVACDASGRVVNVSRPGLVSDNNDFIEDTYMSGTLS PSLGNLSSLQLLDLSNLKDLKGPIPQELGKLSKLTHLFLDTNKLTGSIPITLRYFSQLKKIYLSDNFLSGIVPPSVMKSWTSVSELGLSGNALSGPIPPT IGKLVMVTKLDLHENNFTGSIPTSIGNLKNLKYLDLSENQIAGSIPQSIGGLAALELLYVNQNHITGRIPSSISGLSSMIFCRLSENKLSGSLPPSIGLL SKIQRLILENNKLTGKLPATVGRLTTLTDIFFSNNYFTGKIPSSFVNLLNLQTLDLSRNRLSGQLPPQLAKLKSLQALDLSYNPLGLVRIPDWFQELRVF QLMLAKTGIEGELPHWLSSSSISQLDLSSNALTGKLPRWIGNMTRLSFLNLSNNGFHSSIPVEFKNLSLLMDLDIHSNKFSGRLNVIFSKEAQDPLGHFN SIDLSSNMFTGPVDDDIGERPAMASIHSLILSDNTFRGPLPKSVGKLGELQVLKLVNTGLSGTIPVELGDAKELSTILLSKNKLTGAIPEIVLNLKELKQ FDVSSNKLRGRIPPHKAIIPASAFKNNPGLCGPPLPPCKRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	1.41	0.9221
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.011G055236 [exp]	3.16	0.8402
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	3.16	0.8795
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	4.89	0.8657	EXPA3.1,PtEXPA16
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	6.92	0.8754
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	8.48	0.8344
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	13.96	0.8234	Pt-ATCSLC05.4
AT3G27050			unknown protein		Potri.001G329600 [exp]	14.07	0.7924
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	15.29	0.8452
AT3G18050			unknown protein		Potri.015G040900 [exp]	17.97	0.8222

Compare expression of checked genes

Potri.005G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.