Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66330 507 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 213 / 3e-65 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 171 / 1e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G71400 148 / 2e-38 AtRLP12 receptor like protein 12 (.1) AT4G28650 142 / 2e-36 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 135 / 7e-34 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07180 133 / 2e-33 ERL2 ERECTA-like 2 (.1) AT3G28890 132 / 3e-33 AtRLP43 receptor like protein 43 (.1.2) AT5G62230 132 / 4e-33 ERL1 ERECTA-like 1 (.1.2) AT3G56370 132 / 4e-33 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016800 [exp] 708 / 0 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 518 / 0 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 217 / 2e-66 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 216 / 8e-66 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 215 / 4e-65 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 213 / 5e-65 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 144 / 1e-37 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.007G016700 [exp] 143 / 3e-37 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 142 / 2e-36 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028359 [exp] 468 / 3e-164 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 233 / 2e-72 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 233 / 4e-72 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 219 / 6e-67 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10041809 [exp] 151 / 1e-44 AT5G66330 131 / 6e-38 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 152 / 3e-42 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10005017 [exp] 142 / 2e-36 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008190 [exp] 136 / 9e-36 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10019035 [exp] 137 / 9e-35 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 137 / 1e-34 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G117800.1 pacid=42803668 polypeptide=Potri.005G117800.1.p locus=Potri.005G117800 ID=Potri.005G117800.1.v4.1 annot-version=v4.1 ATGGGCACCCTCAGTTTTTCTTTATTTTCTTTGGTTCTGCTGATCTCAGTCACTAGGCTGTTGGTGGAAGTAGAGTCGAAGACATATTGGGGCGATTTAG AGGTTTTGAAGGAGGTTAAGACCGCGGTGAACCCAAACTCGGTGAGTCCAGGCTCTTGCTTGAGCGCATGGGACTTCACTGTTGACCCATGTGATCATTT ATTCAGTGAGAAATTCACTTGTGGGTTCAGGTGTGACATTGTAGTGTCCGGTTCAAGCAGAGTCACTGAGCTCAGCCTTGACCAGGCGGGTTACTCGGGT ACTCTCTCTTCCATTACTTGGAACCTCCCTTATTTGCAAACACTCGACCTTTCAAATAATTACTTCTATGGCCAAATCCCTGAGTCGTTATCCAACTTGA CTCAACTGAGGCGACTCGGTCTGTCGAGAAACTTGTTGTATGGTGAGATACCCACCTCAATTGGCTCACTAAGTAGCCTGGAAGAGCTGTATTTGGACAA CAACAACCTTCAAGGCAATATTCCTGCAAGTTTCAATGGTCTTGCTAGTTTAAAAAGGCTCGAGATTCAATCAAACAAGCTAATTGGTGAGTTTCCCGAG TTGGGTCCACTTAAAAATCTCAAGTATTTTGATGCAAGTGACAATGCCATATCAGGTGATGTCCCATTAGCATTACCAGCATCTTTAGTTCAACTCTCAA TGAGAAACAATGGCTTACGAGGCAAATTAGACCCTCAAAGCTTTAGAAGCTTGGCTTTTTTACAAGTACTTGATTTGAGCCACAATAACCTCAGTGACTC AGTCCCTTTACCTCTCTTCACTCACCCTTCACTTCAACAACTCACCCTCTCGTTCAATTTCTTCACGTCCGTACAATCCCCACCATTCCCATTAACCACA ACTCTCCAAAGTGCACTGGTAGCCATTGATTTAAGCAATAATGAACTCAGAGGTGTTTTGCCTTCTTTCATGGCTTCAATGCCAAAGCTCTCAGCTTTAT CCCTTGAAAACAACAAATTTTCAGGAATGATACCGACCCAATTTGCAATAAAAACGGTTTTACCCGGATCCGAATTGTCTCCATTCGATAGGCTTTTTTT GGGAGGGAATTACTTATATGGACCTATACCGGGTCCTTTAATGGAGCTCCAACCAGGTTTTGCTGATGTAAGATTGAATGATAATTGTTTGTACCGTTGT CCAGTTAGTTTCTTTTTTTGTCGAGGTGGTGATCAAAAATCACAAATCGAATGTAAGAGTTTTAGCCCTTTGATCCCATGA
AA sequence Show only first row Show all	>Potri.005G117800.1 pacid=42803668 polypeptide=Potri.005G117800.1.p locus=Potri.005G117800 ID=Potri.005G117800.1.v4.1 annot-version=v4.1 MGTLSFSLFSLVLLISVTRLLVEVESKTYWGDLEVLKEVKTAVNPNSVSPGSCLSAWDFTVDPCDHLFSEKFTCGFRCDIVVSGSSRVTELSLDQAGYSG TLSSITWNLPYLQTLDLSNNYFYGQIPESLSNLTQLRRLGLSRNLLYGEIPTSIGSLSSLEELYLDNNNLQGNIPASFNGLASLKRLEIQSNKLIGEFPE LGPLKNLKYFDASDNAISGDVPLALPASLVQLSMRNNGLRGKLDPQSFRSLAFLQVLDLSHNNLSDSVPLPLFTHPSLQQLTLSFNFFTSVQSPPFPLTT TLQSALVAIDLSNNELRGVLPSFMASMPKLSALSLENNKFSGMIPTQFAIKTVLPGSELSPFDRLFLGGNYLYGPIPGPLMELQPGFADVRLNDNCLYRC PVSFFFCRGGDQKSQIECKSFSPLIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.005G117800 [exp]	0	1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	2.00	0.8896
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	11.61	0.8320	GLP10.2
AT2G24230			Leucine-rich repeat protein ki...		Potri.018G107400 [exp]	15.87	0.8561
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	19.69	0.8712
AT3G16200			unknown protein		Potri.001G186200 [exp]	20.24	0.8596
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.009G031800 [exp]	23.49	0.8356	Pt-EXPA6.1,PtrEXPA5
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	24.67	0.8704
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	27.22	0.8399
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	27.42	0.8704	KOR1.2
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	27.74	0.8528	MYB61.2

Compare expression of checked genes

Potri.005G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.