Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 207 / 7e-57 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 174 / 4e-46 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 154 / 8e-40 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016900 [exp] 1055 / 0 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G234300 [exp] 220 / 2e-60 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.002G028300 [exp] 211 / 3e-57 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028358 [exp] 337 / 3e-104 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 301 / 5e-91 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10033185 [exp] 228 / 4e-63 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10010629 [exp] 198 / 2e-52 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.005G117900.1 pacid=42804614 polypeptide=Potri.005G117900.1.p locus=Potri.005G117900 ID=Potri.005G117900.1.v4.1 annot-version=v4.1 ATGGCAGCAATTTCTGCTACTGCCACTACTAGTGTTACTACCACCACTTCAATTCCTCCTCCTCCTCCGTGGATCCCCGAAGACGACCTCTTGTTGAAAA ACGCTATCGAGGCAGGTGCTTCGTTGGAAGCGCTGGCGAAAGGGGCGGTGAGATTTTCGAGGAAATTTAGTTTGCGTGAATTGAGTGATCGCTGGCATTC TTTACTGTATGATGATGATGTTTCGGCTGAAGCGTCTGGTCGAATGGTAGAGTTACAACTTTCTAATTTGTCCTTTTCCAAAGTAAATACTATTACTAGT AGCAGTAATAATAATAAATTTGGTGCTGCTTTGAAAGAGAGTGATTCTGTGAAAAGAAAATTTGAATGTGTTCGGCAATTGTATTATGCAACGAGGAAGA AATTGCGGAAGCGTGGTGTTGGAGGGTGTGGTGATTTTTGTTTTCTTGATTCGCTGGATGGTGGTTCTTTTGAAGGGGGTGTTGGATTTGGTGGGAATGG CGGGTTTGGAGAGGATGATCGAGTGCGTTTTGGATTTGTTGGGGGAAATGAAGGTGGGGAAGGGGATGTGTGTTTTGAGAGAGAAAATGTGCAAAGGGAT GTGCAGGATGTGCAGGATGTTGAAGATGGATTCGTTGAATTTCGAGATTCTGAGAGAAGTGAGGAACCTGGGCCATGTGGTGTGCCAGAAAGTGATGCTT TGATTCATGCAGGGCGAATTGAGTCTTTGGCACCAAGGGTGCCATTATGGAAAGGGATGGAGGATGTTTCTGCACCTAAAATGCCAGCTAGTGTGAATGG TAAAGGTCAAAGTGAAGGGGATTTGATTGTAAATCATGATGATGTAAATGGGTATAAAATGAGTTTGGTGGGAGTTGAGGTTGATCACTCCAGAGTAGAG TTGCGTGATGAACCTGTATTTGATGTACGTGATAGGTCAACTGCAATTTCAGAATTTGATTTTCCAGATATTTCAGACTCGCTCTTGAACTTTCCAAATG ACAATGAGCCACTTTTTATCGATGTTAACGGGAAAGATGCTATAGATAAAGCTTGTTATGATAGCATTACTACTTCACTTTTGGTGAGTTCTCCTAATGA TGTTCAGGGTGATGTGCCTGATGTTAAAGATCCAGTGATGTTAGCTTCAGATACAAGCCTCGGAATACCTGATGGTGCATGCCCTGCAGAGTTAGAGGTT GTTGCAGAGGAATCGCATTCTGTTGGTGGTAAGCAGGATATTAATTTTGTGTCAGAAATGAACGCACCACCATCTACATCAGCACCAAAAGTTTTGTCCG CTGAAGAAAATGTTGGAGAGATGGAGTGCACGTTGAATATGGAAGACTTTGAAATCCCATGCAATGATGATGTTTTCATAGGTAAAACAATTTCTTCTCC CATAATGGAACAAATTTCTAACCTGACTCACAACCTGCCTTCCTCGAGCCTTGATAAAAAGGATTGCAAACAAGAGATAATCTTGCTGAAGAAAGAAGGA ATTCCTGCTCAATGTCTTACTTCTCCGCAGATGGTAGGGGGCAGTATGTTGCCAGTAACCAGTCCAAGACACCAACCTGTTTGCAGTGGTGCCAAATGCG AGTCTCTTGCTTTAATTTCTAGACCAGTAATCACAGCCCATGTAGAACCAAGCGAGGGCAGAGTAGCCTTGGGAACTCCTACTCCTTCCACAGTGGGACT GCCAAAGTTTGGGTCATTAGATGAAAAATTAAGTTTGCCTATAAAAGTTATTTCAGTACCCTCAACATCAAATCAGGAAGAATCCGGGAGTGATGATGAT GTTCCCTGCTTTTCAGACATTGAAGCCATGATACTTGAAATGGATCTATGCCCGGATGATTCAGATTCATTTTTTAATCACGAAGTCTCAAGATATCAGA ATGAAGATGCAATGAGGGCAATTATAAGGTTGGAACAGTGTGCTCAGTCTTCTATGCAACGAGCCATTGCATCTCGAGGAGCACTTGCTGTCTTGTACGG GCGCCATTTGAAGCATTATATCAAGGACACTGAGGTTATGCTTGGCAGAGCGACAGAGGATATGGATGTTGATATTGATTTGGGTAGAGAAGGGCCTGCC AACAAAATATCAAGACGGCAGGCACTCATAAAGATGGAAGGAGATGGTTCTTTCTTTTTGAAGAATCTTGGTAAGAGTCCAATGTTTTTGAATGGCAAAG AACTTGCTTCTGGACAGAGTAGGGGACTGAGATCAAGTAGTTTGATTGAGATTAGGGAAATGGCATTTGTCTTTGAAGTGAATAGCAAATCGGTGAAGCG GCATCTGGTGAGTGTCATCAAAAACCACAAAGAAAACAATTTCAAATCTAAATGGTCAGATAAAGGGGTAAACCACCGAGAAACTGATTTCAAGTTTGAA TGGTCAGAAGGGGTTCCATGA
AA sequence Show only first row Show all	>Potri.005G117900.1 pacid=42804614 polypeptide=Potri.005G117900.1.p locus=Potri.005G117900 ID=Potri.005G117900.1.v4.1 annot-version=v4.1 MAAISATATTSVTTTTSIPPPPPWIPEDDLLLKNAIEAGASLEALAKGAVRFSRKFSLRELSDRWHSLLYDDDVSAEASGRMVELQLSNLSFSKVNTITS SSNNNKFGAALKESDSVKRKFECVRQLYYATRKKLRKRGVGGCGDFCFLDSLDGGSFEGGVGFGGNGGFGEDDRVRFGFVGGNEGGEGDVCFERENVQRD VQDVQDVEDGFVEFRDSERSEEPGPCGVPESDALIHAGRIESLAPRVPLWKGMEDVSAPKMPASVNGKGQSEGDLIVNHDDVNGYKMSLVGVEVDHSRVE LRDEPVFDVRDRSTAISEFDFPDISDSLLNFPNDNEPLFIDVNGKDAIDKACYDSITTSLLVSSPNDVQGDVPDVKDPVMLASDTSLGIPDGACPAELEV VAEESHSVGGKQDINFVSEMNAPPSTSAPKVLSAEENVGEMECTLNMEDFEIPCNDDVFIGKTISSPIMEQISNLTHNLPSSSLDKKDCKQEIILLKKEG IPAQCLTSPQMVGGSMLPVTSPRHQPVCSGAKCESLALISRPVITAHVEPSEGRVALGTPTPSTVGLPKFGSLDEKLSLPIKVISVPSTSNQEESGSDDD VPCFSDIEAMILEMDLCPDDSDSFFNHEVSRYQNEDAMRAIIRLEQCAQSSMQRAIASRGALAVLYGRHLKHYIKDTEVMLGRATEDMDVDIDLGREGPA NKISRRQALIKMEGDGSFFLKNLGKSPMFLNGKELASGQSRGLRSSSLIEIREMAFVFEVNSKSVKRHLVSVIKNHKENNFKSKWSDKGVNHRETDFKFE WSEGVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	0	1
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	2.44	0.8511
AT1G18610			Galactose oxidase/kelch repeat...		Potri.015G059400 [exp]	3.00	0.8667
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	3.46	0.8798
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	6.00	0.8437
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.007G016900 [exp]	6.63	0.8111
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	7.21	0.8554
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	7.93	0.8487
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	8.36	0.8680
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	9.38	0.8444
AT3G49490			unknown protein		Potri.012G007000 [exp]	12.44	0.8543

Compare expression of checked genes

Potri.005G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.