Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54340 226 / 8e-75 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT5G20240 135 / 2e-39 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G23260 120 / 5e-33 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 119 / 8e-33 MADS AGL6 AGAMOUS-like 6 (.1) AT1G24260 116 / 2e-31 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 115 / 2e-31 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 113 / 1e-30 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G57230 112 / 3e-30 MADS AGL16 AGAMOUS-like 16 (.1.2) AT5G51870 111 / 3e-30 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT4G37940 111 / 6e-30 MADS AGL21 AGAMOUS-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017000 [exp] 356 / 3e-126 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G028400 [exp] 223 / 2e-74 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.005G182200 [exp] 146 / 8e-44 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 143 / 2e-42 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 122 / 6e-34 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.007G073000 [exp] 119 / 7e-33 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G109601 [exp] 115 / 1e-31 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.012G125600 [exp] 115 / 2e-31 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G100200 [exp] 114 / 2e-31 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031960 [exp] 248 / 1e-83 AT3G54340 275 / 5e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10010630 [exp] 248 / 2e-83 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10033187 [exp] 246 / 1e-82 AT3G54340 275 / 4e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10029719 [exp] 139 / 2e-40 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 134 / 9e-39 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10017388 [exp] 118 / 2e-32 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 118 / 2e-32 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026678 [exp] 114 / 2e-31 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005302 [exp] 113 / 2e-30 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003125 [exp] 110 / 5e-30 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.005G118000.2 pacid=42802714 polypeptide=Potri.005G118000.2.p locus=Potri.005G118000 ID=Potri.005G118000.2.v4.1 annot-version=v4.1 ATGGGTCGTGGAAAGATTGAGATCAAAAAGATTGAAAACCCCACTAACAGGCAAGTCACCTACTCAAAAAGAAGAAATGGTATTTTCAAGAAAGCCCAGG AACTCACTGTTCTTTGTGATGCTAAGGTCTCTCTTATCATGTTCTCCAACACTAACAAATTCCATGAGTACATTAGCCCCTCCACAACGACAAAGAAGAT CTACGATCAATATCAGAAGGCTTTAGGCATAGATCTGTGGAGCGCTCAATACGAGAAAATGCAAGAGCAATTGCGGAAGCTGAAAGATATCAATCATAAG CTGAAAAAAGAAATCAGGCAGAGGATAGGAGAGGACCTTAATGAATTGAGCATTGATCATCTGCGCGTTCTTGAGCAAAATATGACTGAAGCCTTGAATG GTGTCCGTGGCAGGAAGTACCATGTTATCAAAACACAAACCGAAACCTATAAAAAGAAGGTAAGGAGTTTGGAGGAGAGACATGGAAACCTCTGGATGGA ATATGAAGCAAAAATGGAGGATCCACGATATGGATTAGTGGACAGTGAAGGAGATTATGAATCTGCTGCTGCTCTTGTAAATGGGGCTTCCAACCTCTAT GCATTCCGCCTGCACCAGGGGCACCACCACCACCATCCTAATCTTCACCTTGCTGGTGGGTTTGGACCCCATGACCTCCGTCTTCCTTGA
AA sequence Show only first row Show all	>Potri.005G118000.2 pacid=42802714 polypeptide=Potri.005G118000.2.p locus=Potri.005G118000 ID=Potri.005G118000.2.v4.1 annot-version=v4.1 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKFHEYISPSTTTKKIYDQYQKALGIDLWSAQYEKMQEQLRKLKDINHK LKKEIRQRIGEDLNELSIDHLRVLEQNMTEALNGVRGRKYHVIKTQTETYKKKVRSLEERHGNLWMEYEAKMEDPRYGLVDSEGDYESAAALVNGASNLY AFRLHQGHHHHHPNLHLAGGFGPHDLRLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.005G118000 [exp]	0	1
AT2G39450		ATMTP11	Cation efflux family protein (...		Potri.010G211300 [exp]	20.00	0.7548	PtrMTP11.1
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Potri.001G126000 [exp]	21.21	0.7285
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	30.19	0.7654
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051800 [exp]	45.69	0.7332
					Potri.019G129466 [exp]	48.86	0.7460
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	66.18	0.7410
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	69.71	0.7076
					Potri.015G135100 [exp]	88.65	0.7286
AT4G03130			BRCT domain-containing DNA rep...		Potri.002G214050 [exp]	101.33	0.6765

Compare expression of checked genes

Potri.005G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.