Plant FIBer expression Database

Potri.005G118300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51050 1110 / 0 FG-GAP repeat-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G017600
[exp]
1310 / 0 AT3G51050 1107 / 0.0 FG-GAP repeat-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014275
[exp]
983 / 0 AT3G51050 950 / 0.0 FG-GAP repeat-containing protein (.1)
Lus10025977
[exp]
575 / 0 AT3G51050 549 / 0.0 FG-GAP repeat-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G118300.1 pacid=42804505 polypeptide=Potri.005G118300.1.p locus=Potri.005G118300 ID=Potri.005G118300.1.v4.1 annot-version=v4.1
ATGAGAAAACGCGATTTGGCCATCCTCATGCTCTCCGCCTTCTCCATCTTCTTCTCTCTCCAGCACGAAGGAGATTTCTCTTTCAGAGAGGCGTGGTTTC
ATTTAACCGATGAGTATCCAATCAAATACGAGACTGAACGTCTCCCCCCGCCGATTGTTTCCGATCTTAATGGCGACGGCAAGAAAGAAATTCTTGTCGC
CACTCACGACGCCAAAATCCAGGTGCTGGAGCCGCATTTGAGGAGAGTAGATGAGGGCTTTAGTGAAGCAAGATTGTTAACGGAACTATCACTATTGCCT
GATAAAACACGGGTTGCGGCAGGTAGACGCGCGGTAGCAATGGCTACTGGTGTAATTGATAGGAGATATAAGGAAGGGCATCCGTTAAAGCAAGTTTTGG
TTGTTGTAACCTCAGGGTGGTCTGTTATGTGCTTTGATCATAACCTTAAGAAGCTTTGGGAAACTAATTTGCAGGAGGATTTTCCGCATAATGCACATCA
TAGGGAGATTGCAATATCAATAAGTAACTATACATTGAAGCATGGGGATTCTGGATTGGTTATTATTGGTGGGAGAATGGAAATGCAGCCACATATTTAT
TCAGATCCTTTTGAAGAAATTGGCATGGCAGAGAAAAATGCTGAGCAGCATAGAAGAAGCGCCAGTGAGAAAGAGCCATCAGAGAACTCTGGAACTGTGA
ATCTACGCCATTTTGCCTTGTATGCTTTTGCTGGTCGAACTGGTGCCCTTCGATGGAGCAGAAAGAATGAGAACATTGAAGCGCAGTCTTCAGACGCTGC
ATCACAGTTGATTCCACAACATAACTACAAGCTTGATGTGCATGCTTTAAACAGTCGCCATCCAGGAGAGTTTGAATGCAGGGAATTTAGGGAATCAATC
CTTGGAGTTATGCCACATCACTGGGATAGGAGAGAAGATACTGTGTTGCAGCTATCGCACTTTAGGCGCCATAAAAGAAAAACATCAAAAAAATCTAATG
GAAAGACAACCAACTACCCTTTCCACAAGCCTGAGGAAAACCATCCTCCTGGAAAAGACTCAGCAAAGAAAATTTCTAACCTGATTGGGGAAGCTGCAAA
ATATGCTGGCTCAACAAAATCAAAGAAGCCATTTCAATATATTCCAACTATAACAAACTACACTCAGCTTTGGTGGCTTCCTAATGTTGTTGTGGCTCAT
CAAAAAGAAGGGATAGAAGCTGTTCATTTGGCATCCGGCCGCACCCTGTGTAAGCTTCATCTTCAAGAAGGTGGCCTTCATGCTGATATCAATGGTGATG
GAGTCCTAGATCATGTCCAGGCTGTTGGAGGAAATGGAGCTGAGCAGACTGTCATTAGTGGATCGATGGAAGTGTTGCAACCATGTTGGGCTGTTGCAAC
TTCGGGTGTACCAGTGCGAGAGCAACTTTTCAATGCTTCTATATGTCATCATCATTCACCACTCAACTTATTCCAACATGGAGATTTCGGCAGAAATTTT
GGTCGGACTGATGTATCTTCTTTAGAGGTGGCAACCCCTATTCTCATCCCAAGAGGTGATGGCCATAGGCATCGCAAGGGGAGTCATGGTGATGTTGTCT
TCTTAACTAATCGAGGGGAGGTGACATCATACTCCCCTGGCCTGCATGGTCACGATGCTGTTTGGCAATGGCAAATATCGACAGGTGCTACATGGTCAAA
TCTTCCTTCTCCATCGGGGATGATGGAAGGTGGTATGGTGGTCCCCACATTGAAGGCATTTTCTTTGCGTGCACGTGACAACCAACAAATGATCCTCGCA
GCTGGTGATCAAGAGGCTTCAGTTATATCTCCTGGAGGAAGTATTCAGACGTCGGTTGATCTTCCTGCACCACCCACCCATGCTCTGATCTGCGAGGATT
TCTCAAATGATGGACTTACTGACCTAATTGTTGTGACATCAAATGGGGTGTATGGCTTTGTCCAGACTAGGTCACCAGGTGCCCTCTTCTTCAGCACACT
GGTTGGTTGCCTTCTAATTGTAATGGGAGTTATTTTTGTCACACAACACTTGAACTCCATAAAGGAGAAACCACGCGCCTCATCTGCTGCTCGATGA
AA sequence
>Potri.005G118300.1 pacid=42804505 polypeptide=Potri.005G118300.1.p locus=Potri.005G118300 ID=Potri.005G118300.1.v4.1 annot-version=v4.1
MRKRDLAILMLSAFSIFFSLQHEGDFSFREAWFHLTDEYPIKYETERLPPPIVSDLNGDGKKEILVATHDAKIQVLEPHLRRVDEGFSEARLLTELSLLP
DKTRVAAGRRAVAMATGVIDRRYKEGHPLKQVLVVVTSGWSVMCFDHNLKKLWETNLQEDFPHNAHHREIAISISNYTLKHGDSGLVIIGGRMEMQPHIY
SDPFEEIGMAEKNAEQHRRSASEKEPSENSGTVNLRHFALYAFAGRTGALRWSRKNENIEAQSSDAASQLIPQHNYKLDVHALNSRHPGEFECREFRESI
LGVMPHHWDRREDTVLQLSHFRRHKRKTSKKSNGKTTNYPFHKPEENHPPGKDSAKKISNLIGEAAKYAGSTKSKKPFQYIPTITNYTQLWWLPNVVVAH
QKEGIEAVHLASGRTLCKLHLQEGGLHADINGDGVLDHVQAVGGNGAEQTVISGSMEVLQPCWAVATSGVPVREQLFNASICHHHSPLNLFQHGDFGRNF
GRTDVSSLEVATPILIPRGDGHRHRKGSHGDVVFLTNRGEVTSYSPGLHGHDAVWQWQISTGATWSNLPSPSGMMEGGMVVPTLKAFSLRARDNQQMILA
AGDQEASVISPGGSIQTSVDLPAPPTHALICEDFSNDGLTDLIVVTSNGVYGFVQTRSPGALFFSTLVGCLLIVMGVIFVTQHLNSIKEKPRASSAAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51050 FG-GAP repeat-containing prote... Potri.005G118300
[exp]
0 1
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
3.46 0.8147
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
10.95 0.7873
AT4G38200 SEC7-like guanine nucleotide e... Potri.004G208400
[exp]
12.24 0.8212
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.010G227100
[exp]
15.29 0.8032
AT3G01380 transferases;sulfuric ester hy... Potri.001G350700
[exp]
16.91 0.7871
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.001G185050
[exp]
17.14 0.7563
AT3G60860 SEC7-like guanine nucleotide e... Potri.014G070600
[exp]
20.44 0.7877
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Potri.005G099800
[exp]
23.49 0.7552
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
23.51 0.8029
AT5G56510 APUM12 pumilio 12 (.1) Potri.001G002600
[exp]
24.00 0.8107

Potri.005G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.