Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36290 706 / 0 CRT1 compromised recognition of TCV 1 (.1) AT4G36280 706 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 499 / 4e-172 ATP binding (.1) AT1G19100 466 / 2e-156 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 446 / 1e-146 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G24970 439 / 2e-145 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 393 / 2e-127 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079400 [exp] 492 / 5e-167 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G089000 [exp] 491 / 2e-165 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G100900 [exp] 463 / 3e-153 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 459 / 7e-152 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 434 / 4e-142 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 105 / 3e-23 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014276 [exp] 774 / 0 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10025978 [exp] 540 / 0 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 462 / 1e-152 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039959 [exp] 448 / 1e-149 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 446 / 1e-147 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10041578 [exp] 444 / 4e-147 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 434 / 7e-143 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 365 / 1e-118 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.005G118400.1 pacid=42804067 polypeptide=Potri.005G118400.1.p locus=Potri.005G118400 ID=Potri.005G118400.1.v4.1 annot-version=v4.1 ATGCCGCCTAAAGTAGAGAAGCAGCAACCGATGAATGTAGTAGAAATCGCAAGTAGCGATGACGAAGTCGATATTGGTCCTCCGCCAGGTATGCCACGCA AAACGACGCCGTCGTCTTCAAAGTCGAGGAGACAGCAGCCGCAAAAACAGCAGCAGCAAAAACAGCAGCAGCAGCAGAAGCAACAACAGCAAGATAGTAG CTCGGAAGCAATAGCGGCACCGGTGCCTGCGTATCAGAGTCTGGATTGTCGAAGTTTCTGGAAAGCGGGAGCGTATGACGTGGGTCCCATAGCTAGCAAG GCCCCTGCTCAAGGTCAATTGGAGCATGCAAGAGTGCACCCTAAGTTTTTGCATTCTAATGCAACTTCTCACAAATGGGCTTTTGGAGCAATTGCTGAGC TTTTGGATAATGCTGTTGATGAGGTTCATAATGGTGCAACCTTTGTGAAGGTTGATAAAATTGATATCATGAAAGACAACTCTCCTGCTCTACTTTTCCA AGATGATGGTGGTGGAATGGATCCTGATGGTATCCGGAAATGCATGAGTTTGGGTTATTCTTCCAAGAAATCAAATACAACAATTGGACAATATGGTAAT GGATTTAAGACAAGTACTATGCGGCTAGGTGCTGATGTTCTTGTTTACAGTTGTGCAACTCGTGCAGGCAAAGCAACTCAAAGCATTGGTCTATTATCCT ACACCTTTTTACGAAAAACTGGGCAGGATGATGTTATTGTTCCAATGATTGATTTCGACATTTCTGGCAACCGGGCAGAGCCGATACTTTATGGCTCACA AGATGACTGGTCTTCTAACTTGAAAACAATCCTTGAATGGTCTCCATTCGCTTCAAAGGAGGAGCTCATGCAACAGTTTGAGGATATTGGCCGGCATGGT ACGAAAATAATAATATACAACTTATGGTTAAATGACGAGGGCATTTATGAATTGAGTTTTGACGATGACGAAGAGGATATACGTCTGAGAGATGAAGCTA ATCATGGTCAGACAAAACTACACAAAAAAACAGTTGAACTTCGATCTCATATTTCTTATTGCATCCGTTATTCATTAAGGGCTTATGCTTCGATTTTGTA CCTAAGAAAATTCACAAATTTCAGCATTGTGCTGAGGGGGAAGCCTGTCCAGCAGTTTAATATTGTAGATGACTTGAAATATTCAAAAACAGTGTCATAC AAGCCTCAGGTTGGAACAATAAAAGAGGTCACTGTGGAGACAACGGTTGGTTTCATTAAAGAGGCTCCTGCTCTTTCTGTTTCTGGATTCAATGTGTACC ATAAAAATCGACTCATCAGGCCCTTCTGGAAAGTCACTGGTGATGCTGCAGTAAAAGGGAACGGTGTTGTTGGAGTTCTTGAAGCAAATTTTATAGAACC TGCACATGATAAGCAGGATTTTGAGAGGTCGTCGTTGTATATTCGATTGGAAGCTAGACTGAAACAGATGGTTATGGATTACTGGAAACGCCATTGTCAC TTGCTTGGAATTCTGCCTCCTGGTGTCAAATCACTTGATATTCAAAAGCAAGGTGCAGTTAAAACACAAAAGCCATTGCCTGCTAACCGGCATAACATTG ATCTTCCAACTAATGAAGAGGAAATGCATCTGGATCAACCTATCACTAGGAGCAATAGGCAACTTGGAAGCACCGGCCAGAGTGATTTACCTGTGGAAGA GTCCATTATTGGGTTGGCAGATGGATCTTACAATGGAGTTATATCTGATGATGGTCTTGGATCTAAGCCAATTGATCAGATATGTGAAGAGAACATCGAA CTTTTTATGAGGTGTGAAGAATACGCAAAGAAGGAGACTGAATTGAAACAAACGGTTGAGGAATTAGAGAAAGAGTTGGAACAAGCCAAGAGGAAGTGTG CTCAACTTGCTTCGCACCTGGAGACTAAAAGGAAACAAAAGATCATGCAGCAACAAAGTGAAAAGGTCGCATGA
AA sequence Show only first row Show all	>Potri.005G118400.1 pacid=42804067 polypeptide=Potri.005G118400.1.p locus=Potri.005G118400 ID=Potri.005G118400.1.v4.1 annot-version=v4.1 MPPKVEKQQPMNVVEIASSDDEVDIGPPPGMPRKTTPSSSKSRRQQPQKQQQQKQQQQQKQQQQDSSSEAIAAPVPAYQSLDCRSFWKAGAYDVGPIASK APAQGQLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVHNGATFVKVDKIDIMKDNSPALLFQDDGGGMDPDGIRKCMSLGYSSKKSNTTIGQYGN GFKTSTMRLGADVLVYSCATRAGKATQSIGLLSYTFLRKTGQDDVIVPMIDFDISGNRAEPILYGSQDDWSSNLKTILEWSPFASKEELMQQFEDIGRHG TKIIIYNLWLNDEGIYELSFDDDEEDIRLRDEANHGQTKLHKKTVELRSHISYCIRYSLRAYASILYLRKFTNFSIVLRGKPVQQFNIVDDLKYSKTVSY KPQVGTIKEVTVETTVGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDAAVKGNGVVGVLEANFIEPAHDKQDFERSSLYIRLEARLKQMVMDYWKRHCH LLGILPPGVKSLDIQKQGAVKTQKPLPANRHNIDLPTNEEEMHLDQPITRSNRQLGSTGQSDLPVEESIIGLADGSYNGVISDDGLGSKPIDQICEENIE LFMRCEEYAKKETELKQTVEELEKELEQAKRKCAQLASHLETKRKQKIMQQQSEKVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36290		CRT1	compromised recognition of TCV...		Potri.005G118400 [exp]	0	1
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	11.26	0.7552
AT1G14300			ARM repeat superfamily protein...		Potri.019G092000 [exp]	14.49	0.7074
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	16.49	0.7502
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	33.24	0.7356
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	33.82	0.7179
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	36.74	0.6776
AT3G47490			HNH endonuclease (.1.2.3)		Potri.009G004200 [exp]	42.89	0.7248
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Potri.003G158000 [exp]	46.37	0.7282
					Potri.002G044400 [exp]	74.60	0.6792
AT4G14746			unknown protein		Potri.010G082500 [exp]	83.07	0.6684

Compare expression of checked genes

Potri.005G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.