Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66390 504 / 0 Peroxidase superfamily protein (.1) AT4G36430 462 / 6e-165 Peroxidase superfamily protein (.1) AT2G18150 454 / 2e-161 Peroxidase superfamily protein (.1) AT2G18140 426 / 3e-150 Peroxidase superfamily protein (.1) AT3G50990 413 / 5e-145 Peroxidase superfamily protein (.1) AT1G44970 385 / 3e-134 Peroxidase superfamily protein (.1) AT5G06720 324 / 3e-110 ATPA2 peroxidase 2 (.1) AT5G06730 306 / 1e-102 Peroxidase superfamily protein (.1) AT4G08770 300 / 1e-100 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G35380 299 / 2e-100 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019300 [exp] 579 / 0 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 388 / 3e-135 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 316 / 4e-107 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.013G083600 [exp] 310 / 4e-105 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 308 / 5e-104 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 308 / 6e-104 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 308 / 2e-103 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 308 / 2e-103 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 307 / 3e-103 AT5G06720 451 / 5e-160 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041784 [exp] 536 / 0 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 383 / 3e-133 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10028337 [exp] 365 / 3e-122 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1) Lus10034207 [exp] 322 / 1e-109 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10004163 [exp] 301 / 2e-101 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025255 [exp] 299 / 2e-100 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 295 / 1e-98 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10032786 [exp] 293 / 4e-98 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 291 / 1e-97 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10029065 [exp] 293 / 2e-97 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G118700.1 pacid=42805393 polypeptide=Potri.005G118700.1.p locus=Potri.005G118700 ID=Potri.005G118700.1.v4.1 annot-version=v4.1 ATGCCTCAGCTCATTAGCGTTGTCTTGGTTCTTGGTCTTGCTTTCCTTGCCTTTTCTCCGATTTGTTTTTGTGGCAAGACAGCTGGTGGCTACCTCTATC CACAGTTTTACGATAGGTCATGCCCAAAAGCTCGAGAAATAGTCAACTCCATTGTAGCCAAGGCAGTTGCTAAAGAAGCTCGTATGGCAGCCTCATTACT TAGGCTCCATTTTCATGACTGCTTTGTCAAGGGCTGTGACGCATCAATATTGCTAGACAGCACCGGAAGCATAATAAGTGAGAAGGGGTCAAATCCGAAT AGAAACTCCGCTCGAGGATTTGAAGTAATTGACGAGATTAAATCTGCACTAGAGAAGGAGTGTCCTAAAACAGTTTCCTGTGCTGATATCATGGCTTTGT CTGCAAGAGACTCTACCGTTCTTACTGGCGGTCCTAGCTGGGAAGTTCCATTGGGAAGAAGGGACTCTAGAAGTGCAAGCTTGAGTGGTTCGAATAACAA TATTCCTGCTCCAAACAACACATTTCAAACAATTCTTACCAAGTTCAAGTTACAAGGCCTTAATGTTGTTGATCTTGTTGCGCTATCTGGGAGCCACACA ATTGGAAATGCTCGGTGCACCAGCTTCAGGCAGAGGCTGTACAACCAGTCAGGAAATGGGAAGCCTGACTACTCTCTTCAACAATCGCTTGCTGCCCAAT TGCGCAACCGGTGCCCCAGATCAGGAGGTGACCAGAACCTGTTTTTCTTGGACTTCGCAAGTCCAAAAAAGTTCGACAACAGTTACTTCAAGAACATATT GGCTTCAAAAGGACTGTTGAACTCTGACCAAGTTCTCCTGACAAAGAATGAAGCATCAATGGAATTGGTCAAGAAATATGCTGAGAGCAATGAGCTTTTC TTTGAGCAATTTTCCAAGTCCATGGTTAAGATGGGAAACATCTCTCCATTGACAGGTTCCAGGGGAGAGATTAGAAAGAGTTGCAGGAAGATTAATTCTT GA
AA sequence Show only first row Show all	>Potri.005G118700.1 pacid=42805393 polypeptide=Potri.005G118700.1.p locus=Potri.005G118700 ID=Potri.005G118700.1.v4.1 annot-version=v4.1 MPQLISVVLVLGLAFLAFSPICFCGKTAGGYLYPQFYDRSCPKAREIVNSIVAKAVAKEARMAASLLRLHFHDCFVKGCDASILLDSTGSIISEKGSNPN RNSARGFEVIDEIKSALEKECPKTVSCADIMALSARDSTVLTGGPSWEVPLGRRDSRSASLSGSNNNIPAPNNTFQTILTKFKLQGLNVVDLVALSGSHT IGNARCTSFRQRLYNQSGNGKPDYSLQQSLAAQLRNRCPRSGGDQNLFFLDFASPKKFDNSYFKNILASKGLLNSDQVLLTKNEASMELVKKYAESNELF FEQFSKSMVKMGNISPLTGSRGEIRKSCRKINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	1.41	0.8540	CHIA5.3
AT1G03220			Eukaryotic aspartyl protease f...		Potri.005G095600 [exp]	3.46	0.7909
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	3.74	0.7807
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	3.74	0.8225
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	4.89	0.8033
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	5.19	0.7752
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	5.91	0.7900
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040500 [exp]	6.92	0.7795
AT1G16040			unknown protein		Potri.003G184701 [exp]	6.92	0.7619
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	8.48	0.7817

Compare expression of checked genes

Potri.005G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.