Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75420 654 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 637 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G52420 171 / 2e-46 UDP-Glycosyltransferase superfamily protein (.1) AT3G15940 138 / 7e-35 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G78800 50 / 2e-06 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031300 [exp] 651 / 0 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G179000 [exp] 119 / 3e-28 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041786 [exp] 706 / 0 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 704 / 0 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024281 [exp] 670 / 0 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 162 / 5e-43 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037523 [exp] 157 / 5e-41 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037008 [exp] 48 / 1e-05 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015797 [exp] 47 / 3e-05 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF16994 [poplar] [flax] Glyco_trans_4_5 Glycosyl-transferase family 4
Representative CDS sequence Show only first row Show all	>Potri.005G118800.1 pacid=42804041 polypeptide=Potri.005G118800.1.p locus=Potri.005G118800 ID=Potri.005G118800.1.v4.1 annot-version=v4.1 ATGGCTAAACTACAGCAGCAGCACAGTAATACAGCTGGGTGGGCTCCTCCTTCAGTGCAAAAACGATGGCTCTTAACACTCTTAATCATGCTTTCCGTCT CAACTCTTATTGCTTTCTTCATAAAATCTGCTTTCGATTCCTGCGATCCCCCCCACCCCCACAACTTCGATGTTGCTGCTTCAAACAAACCGGCCAAAGT TTTTTCGAATTCGATTAAAACGGCGCCGAGTCCGCTTAGTTTCATGAAGTCTAAGCTCGTTCTCTTGGTCTCTCACGAGCTCTCTCTTTCTGGTGGACCA TTGTTACTGATGGAACTAGCATTTCTATTAAGAAGTGTTGGCACTGAAGTTTTTTGGATTACTATCCAGAAACCATCAGAAACTGATGAGGTTGTATACA GTTTGGAGCAAAAGATGTTGGTCCGAGGAGTGCAGGTTCTCTCTGCAAAGGGTCAAGAAGCTATAGATACAGCTTTTAAGGCTGATCTGGTTGTCTTGAA CACTGCGGTTGCTGGTAAATGGCTGGATGCTGTTCTCAAGGAGAATGTTCCTCGTGTTCTCCCAAAGGTGTTGTGGTGGATCCATGAAATGAGGGGGCAT TATTTCAAATTGGATTATGTCAAGCACCTTCCCTTGGTTGGTGGTGCTATGATTGATTCACATGTAACAGCAGAATACTGGAAGAATAGAACTCAAGAGC GTTTGAGGATTAAAATGCCTGAGACCTATGTGGTTCACCTTGGAAATAGTAAGGAACTTATGGAGGTTGCCGAAGATAGTGTGGCAAAAAGGGTTTTGCG TGAGCATATTCGGGAGTCTCTTGGAGTGCGGGATGAAGATATACTCTTTGCCATTATTAACAGTGTTTCACGTGGAAAGGGCCAGGATCTATTTCTGCGT TCCTTTTATGAGAGCTTACAAATAATCCAAGTGAAGAAACTAAAGGTGCCATCAATGCATGCAGTAATTGTGGGTAGTGACATGAGTGCTCAGACTAAGT TTGAGACAGAATTACGGAACTATGTGATGCAGAAAAATATTCAAGATCGTGTTCACTTTATAAATAAAACTTTGACCGTAGCTCCTTATCTAGCTGCAAT TGATGTTCTTGTTCAGAATTCACAGGCACGGGGTGAATGCTTTGGGAGGATAACTATTGAAGCAATGGCATTTCAGCTGCCTGTACTGGGAACGGCAGCA GGAGGCACCACAGAGATTGTCGTGAATGGAACTACTGGATTATTGCATTCAGTTGGAAAAGAAGGGGTCACTCCCCTTGCCAAGAATATCGTAAAACTTG CCACTCATGTCGAGAGGAGGCTTACAATGGGAAAGAGAGGATATGAAAGGGTCAGGGAGATGTTTTTAGAACATCACATGGCACACAGAATTGCTTCGGT GCTGAAAGAAGTTTTACGGAAGTCAAAGAGCCACCCTCATTCTTAA
AA sequence Show only first row Show all	>Potri.005G118800.1 pacid=42804041 polypeptide=Potri.005G118800.1.p locus=Potri.005G118800 ID=Potri.005G118800.1.v4.1 annot-version=v4.1 MAKLQQQHSNTAGWAPPSVQKRWLLTLLIMLSVSTLIAFFIKSAFDSCDPPHPHNFDVAASNKPAKVFSNSIKTAPSPLSFMKSKLVLLVSHELSLSGGP LLLMELAFLLRSVGTEVFWITIQKPSETDEVVYSLEQKMLVRGVQVLSAKGQEAIDTAFKADLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGH YFKLDYVKHLPLVGGAMIDSHVTAEYWKNRTQERLRIKMPETYVVHLGNSKELMEVAEDSVAKRVLREHIRESLGVRDEDILFAIINSVSRGKGQDLFLR SFYESLQIIQVKKLKVPSMHAVIVGSDMSAQTKFETELRNYVMQKNIQDRVHFINKTLTVAPYLAAIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA GGTTEIVVNGTTGLLHSVGKEGVTPLAKNIVKLATHVERRLTMGKRGYERVREMFLEHHMAHRIASVLKEVLRKSKSHPHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75420			UDP-Glycosyltransferase superf...		Potri.005G118800 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105400 [exp]	7.14	0.8534
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	13.07	0.8368
AT3G50910			unknown protein		Potri.005G120600 [exp]	13.26	0.8403
AT3G18150			RNI-like superfamily protein (...		Potri.001G322900 [exp]	13.96	0.8029
AT5G13970			unknown protein		Potri.002G238100 [exp]	18.54	0.8368
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	20.19	0.8298
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	21.21	0.8344
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	21.49	0.7897
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Potri.004G209100 [exp]	22.00	0.8264
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	22.44	0.8129

Compare expression of checked genes

Potri.005G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.