Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44230 792 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 481 / 8e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 477 / 2e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 468 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 471 / 2e-157 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 457 / 1e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 457 / 2e-153 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 454 / 2e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 446 / 2e-148 MEF22 mitochondrial editing factor 22 (.1) AT3G22690 450 / 4e-148 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 511 / 2e-174 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 504 / 1e-171 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 498 / 5e-168 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 491 / 6e-167 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 489 / 3e-165 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 488 / 1e-164 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 483 / 2e-163 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 480 / 8e-163 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 479 / 2e-161 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 503 / 1e-171 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 492 / 5e-167 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 486 / 2e-164 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 479 / 2e-161 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 478 / 5e-161 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 477 / 1e-159 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 470 / 7e-158 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 468 / 3e-156 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 459 / 1e-153 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 457 / 3e-152 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G119000.1 pacid=42805600 polypeptide=Potri.005G119000.1.p locus=Potri.005G119000 ID=Potri.005G119000.1.v4.1 annot-version=v4.1 ATGGTCACCCTCTCGCGCAAATTCTCCACGGCCACATCCGATTCCCTAGCCTGCATTTCCCTCAAGCAATTCCCTCAAAACCCACAAAAACCAACTCCTT TCTATCAAATTCAACAACAACAACCTAAGCAACTAGAATCCCAAATTGTTACCACACTTGATGGCTGCAAAAACCTCACTCAAATCAAACAAGTTCATGC CCGCATCCTCCTTAATGGCCTTGACCAATCCTGCTATGTCCTTGCAAAACTTATCCGCACGCTCACAAAACTTAACATCCCTGTGGACCCATATCCGCTG TCCATTTTTAACCGGGTCAACTACCCAAATCCATTCCTTTACAATGCTCTAATCAGAGGTTATTTGATTGAGGAAAGGTTAAAAGAATCAACTGAGTTTT ATAGTTTGATGAGAAAAGAAGGTGTTGTGCCTGTTTCTTTCACATTTACTGCTCTTTTTAAGGCTTGTGGTGCTAAAATGGATGTGGGTTTGGGGCGGCA AATTCATGGGCAAACGATTTTGGTTGGGGGATTTGGTGAGGATTTGCATGTTGGGAATTCTATGATTGATATGTATATAAAATGTGGGCTTTTGGAGTGT GGGCGAAAAGTGTTTGATGAAATGCCCAATAGGGATGTGATTTCTTGGACGGAGTTGATTTCTGCTTATGCGAAGAGTGGGAACATGGAGAGTGCAGGAG AGTTGTTTGATGGATTGCCAGTGAAGGATATGGTGGCTTGGACAGTGATGGTTTCGGGTTTTGCACAAAATGCTAAACCAAGAGAGGCAATAATGTTTTT CGAGAAAATGCAGGAATTTGGTGTTGAAACTGATGAGATTACTTTGATTGGTGTTATTTCAGCTTGTGCTCAATTGGGCGCTGCTAAGTATGCTGATTGG ATTCGTGATGTTGCAGAGAAATCTGAGTTTGGTGGTAAGCATAGTGTTGTTGTGGGGTCAGCTTTGATTGATATGTATTCAAAGTGTGGGAGTGTTGGAG ATGCGTATAGAGTTTTTCAGGGCATGAAGGAGAGGAATGTGTATTCTTATAGTTCAATGATTTTGGGGTTTGCAATGCATGGTCGTGTACATGATGCAAT GAAATTGTTTGATGAGATGGTGAAAACAGAGATAAAACCAAACAGGGTTACTTTTATTGGGGTGCTTACAGCCTGCAGTCATGCAGGAATGGTAGAACAA GGTTGGCAGATATTTGAGTTGATGGAAAAATGTTATGGCATTAAACCATCTGCTGATCATTACACTTGTATGGTGGATCTGCTTGGACGAGCTGGGCGCT TGCAAGAAGCACATGAGCTTGTTAAAACAATGCCAATAGAGCCTCATGGAGGAGTGTGGGGAGCATTGCTTGGAGCTTGTCGTATCCATAAAAGCCCTGA CATTGCTGCAATTGCTGCTAACCATCTGTTTGAGCTTGAACCCTATTGCATTGGAAACTACATTTTGCTTGCTAACATATATGCATCGTGTGGAAGATGG AATGATGTCTCTACTGTTAGGAAATTGATGAGAACAAGAGGTCTAAGAAAGAACCCTGCATTTAGCTGGATAGAATCAGAGAAAGGAATGGTTCATGAGT TCTTTTCAGGGGATATGACTCATCCAAGGTCTGGTGAGATTAAACAAGCACTGGAGGATCTTCTTGATAGGTTGGAGGCTAAAGGATACCAACCACACTT GAGTTCTGTGTCTTATGATGTGAATGATGAAGATAAGAGACGTATACTAATGACTCACAGTGAGAAGCTTGCTCTGGCATTTGGGTTGATCAGTACAATT CCTGGTTCCAAAATAAGGATAGTGAAAAACCTTAGGATATGTGAGGATTGCCACTCAGTTATATGTGGTGCATCGCAGATCACGGGGAGGGAGATCATTG TGAGGGATATCATGAGATTTCACCATTTTCATGATGGGATATGCTCATGTGGTAATTTCTGGTGA
AA sequence Show only first row Show all	>Potri.005G119000.1 pacid=42805600 polypeptide=Potri.005G119000.1.p locus=Potri.005G119000 ID=Potri.005G119000.1.v4.1 annot-version=v4.1 MVTLSRKFSTATSDSLACISLKQFPQNPQKPTPFYQIQQQQPKQLESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPL SIFNRVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGLLEC GRKVFDEMPNRDVISWTELISAYAKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADW IRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQ GWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRW NDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTI PGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.013G090600 [exp]	3.60	0.8706
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	4.24	0.8993
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	4.47	0.9151
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	6.92	0.9041
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	8.48	0.8807
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	8.94	0.8967
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	9.38	0.8630
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	10.00	0.8899
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Potri.003G102700 [exp]	12.96	0.8078
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	13.49	0.8611

Compare expression of checked genes

Potri.005G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.