Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66450 219 / 1e-70 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT3G50920 207 / 1e-66 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 55 / 7e-09 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021600 [exp] 399 / 2e-141 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G130700 [exp] 63 / 1e-11 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.016G086700 [exp] 53 / 3e-08 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028328 [exp] 275 / 2e-92 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 253 / 7e-84 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 173 / 1e-52 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 172 / 3e-52 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 60 / 2e-10 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1) Lus10041773 [exp] 0 / 1 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF01569 [poplar] [flax] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G120400.1 pacid=42802672 polypeptide=Potri.005G120400.1.p locus=Potri.005G120400 ID=Potri.005G120400.1.v4.1 annot-version=v4.1 ATGACGCCAACAACTACTACTCTCCCCAAACCCACTTCCAAATCCTTGCTTCGTGGCCCTTCTATGCTTAATCAAGCAAAACCCATTTCGTTCCTCCGGT TTCCAGCTTCGAAATCTGATTTTTTTGGATTAAAGAATAAAGCTCTGTCAAAGACCATGACTGAATTGGTCAGAATATCTGTTTTTAGAGCTAGTTATGG TGGTAACAGTGAAGAAAGTACAGGATCTTTTCAGCAAGGAGATGTTATTCATGGGCCTAATAAGTTTCAAAGTGTGCTCTTGGCTGGTGGACTGGAAGCC ACTCTCAATTGCCTGAGCAAATGGCTTGTAGTTACTTTTTTTGGTGCTGTCATTCTTGGGAGGCATGATGCAAAAGCCATGTGGGCTGCTTTGGGGTTAG TTGTGAATTCAATCCTCTCTGTAATCCTTAAGAGAACATTCAACCAAGAGAGACCCGATTCCACATTGAGGTCTGACCCTGGGATGCCATCTTCACATGG ACAGTCCATCTTCTTCACTTTGGTGTTCGCTATTCTGTCAGTTGGGGAATGGCTAGGAGTAAATGAATTCACATTGATCCTCAGTGCATTTATGCTAGCA TTTGGCACATATCTTACATGGTTACGTGTCTCACAAGGACTTCATACAATCAACCAAGCTGTGGTCGGTGCTGCTGTTGGGTCCATTTTCTCCATTTTGT GGTTCTGGTCTTGGGATGCATTTGTGCAGAAAGCATTTATTTCCTCTCTCTGGGTTCGTATGGTTGTTGTTATGGGAGCTGCTGTATTCTGCCTAGCTTT TCTTGTGTATGTTATTGGTTATTGGTTCAACGATGACTGA
AA sequence Show only first row Show all	>Potri.005G120400.1 pacid=42802672 polypeptide=Potri.005G120400.1.p locus=Potri.005G120400 ID=Potri.005G120400.1.v4.1 annot-version=v4.1 MTPTTTTLPKPTSKSLLRGPSMLNQAKPISFLRFPASKSDFFGLKNKALSKTMTELVRISVFRASYGGNSEESTGSFQQGDVIHGPNKFQSVLLAGGLEA TLNCLSKWLVVTFFGAVILGRHDAKAMWAALGLVVNSILSVILKRTFNQERPDSTLRSDPGMPSSHGQSIFFTLVFAILSVGEWLGVNEFTLILSAFMLA FGTYLTWLRVSQGLHTINQAVVGAAVGSIFSILWFWSWDAFVQKAFISSLWVRMVVVMGAAVFCLAFLVYVIGYWFNDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	0	1
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	10.53	0.7972
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	12.00	0.8385
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	13.78	0.8678
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077200 [exp]	14.42	0.8261
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.007G055300 [exp]	18.24	0.8337	CYCD5.1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	18.52	0.8367
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.003G182000 [exp]	23.32	0.7990
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	28.98	0.8134
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	30.13	0.8474
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	33.24	0.8470

Compare expression of checked genes

Potri.005G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.