Plant FIBer expression Database

Potri.005G120600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50910 230 / 5e-70 unknown protein
AT5G66480 163 / 8e-45 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G022100
[exp]
505 / 1e-176 AT3G50910 240 / 5e-74 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025996
[exp]
282 / 8e-90 AT3G50910 302 / 3e-98 unknown protein
Lus10014290
[exp]
281 / 1e-89 AT3G50910 313 / 2e-102 unknown protein
Lus10028325
[exp]
279 / 2e-88 AT3G50910 305 / 3e-99 unknown protein
Lus10041772
[exp]
275 / 5e-87 AT3G50910 313 / 3e-102 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G120600.3 pacid=42805509 polypeptide=Potri.005G120600.3.p locus=Potri.005G120600 ID=Potri.005G120600.3.v4.1 annot-version=v4.1
ATGCCATCTTTTCCTGCAATAGCTTTGGATAGGTTGTTAGAACCTGGAGCTTCAAAATTTGTCGACAAGTCAGTTCCTAGTTCGGACGACAACTATCCAG
TTCTGAAACCGAAGCCTCCTCCACCAAAATCGAAGCCACCTTTACCCAAATCAAACCTAGAGAGGAGGAATAGTGCGTCGGTGGTAGAGAGGAAAGGTAA
TCGTCCTCAAATATCGCCTTCGCTGTATGCGACTCCCGAATCGACCCCACTTCCTGATTCGCCATCTTCATTTCCTCCTTCGCCTTATATAATTAATCAT
AAGCGACGTGGGCCACGCCTTTTGAAGAGCTTTTCAGAGGATGATGTAGCTTCTAGGAAGAAGGAATTGGAGAAAGATGAGGTGAATGGGAATGTGGATA
ATGGAAAAAATGAGCTTGTTGATTCAAGTTATGGCCATTCAGTTACTTTTTTCATCCCTGGTTCTGTTGAAGGTGAGCTTTTGAATGTTGTCAATGGGAG
TCCTAGCAAAGAGGATGTTGTAAATGGGAGTCCTAGTAACGAGGATGTTGTAAATGGTGTCCATCATGATACTATCAACGCGGCGCATGTTAATGGAAAG
ATTGATGGGGAAATAGCGAGTGGTACTATGCAACATGGGACTAGTAATACAAGGATGGACTTTACCTTGGAAAAGGATGTGTTGAAGCCAACTGAGCAGA
ATGGGGAACGAGATGGAGACGTTGATGATTTCTTTGATCCACAGGACTCAATGAGTTATACTAGTAACACCGATGTTGAGGACACCACTGCAGCTGAGTG
TTCTATGAAGCTTACTGCAGCTATACCAGTGGGAGAGTTTTATGATGCTTGGGAAGAACTATCTTCTGAGAGTGGGCCACATCCTTCTCCTTCTCCTCAT
CTCAGTGGAGCTGAATTGCGTGAAATGAGATTGAGTTTGTTGATGGAGATAGAGAAGCGGAAGCAAGCAGAGGAGGCTTTGACTAATATGCAAAACCAGT
GGCAGAGAATCAGGCAAGAATTAGCTCTGGTAGGGTTATCCCTCCCTGCTTTTCCTGTTGATGTGCCAGAGAATGACCAGCCATCAGATTCTAATCCTGC
AGAGGAGATTTGCCAGCAAATCTATCTTGCTCGGTTTGTATCAGAATCTATAGGAAGGGGCATTGCAAAAGCTGAGGCGGAGATAGAGTTGGAAGCTCAG
GTTGAAGAAAAGAACTTTGAAATTGCTCGATTGTGTGATCGACTTCATTATTATGAGGCTGTGAATCGAGAAATGTCTCATAGGAACCAAGAAGTCATAG
AAATGGCACGGCGTAATAGGCAGGCAAGGAAAAGGAGGCGGAAGTGGATTTGGGGCTCAATTGCTGCTGCAATTACACTGGGCACAACAGCCTTGGCATG
GTCGTATCTCCCAGCAATGAGAGGATCTTCTTCTGCCAGTGATTCTCATGCGCCAGAGCATGATGATACAGCTAATTGA
AA sequence
>Potri.005G120600.3 pacid=42805509 polypeptide=Potri.005G120600.3.p locus=Potri.005G120600 ID=Potri.005G120600.3.v4.1 annot-version=v4.1
MPSFPAIALDRLLEPGASKFVDKSVPSSDDNYPVLKPKPPPPKSKPPLPKSNLERRNSASVVERKGNRPQISPSLYATPESTPLPDSPSSFPPSPYIINH
KRRGPRLLKSFSEDDVASRKKELEKDEVNGNVDNGKNELVDSSYGHSVTFFIPGSVEGELLNVVNGSPSKEDVVNGSPSNEDVVNGVHHDTINAAHVNGK
IDGEIASGTMQHGTSNTRMDFTLEKDVLKPTEQNGERDGDVDDFFDPQDSMSYTSNTDVEDTTAAECSMKLTAAIPVGEFYDAWEELSSESGPHPSPSPH
LSGAELREMRLSLLMEIEKRKQAEEALTNMQNQWQRIRQELALVGLSLPAFPVDVPENDQPSDSNPAEEICQQIYLARFVSESIGRGIAKAEAEIELEAQ
VEEKNFEIARLCDRLHYYEAVNREMSHRNQEVIEMARRNRQARKRRRKWIWGSIAAAITLGTTALAWSYLPAMRGSSSASDSHAPEHDDTAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50910 unknown protein Potri.005G120600
[exp]
0 1
AT5G24810 ABC1 family protein (.1.2) Potri.018G003400
[exp]
1.00 0.9218
AT3G23880 F-box and associated interacti... Potri.008G199800
[exp]
1.41 0.9128
AT5G41960 unknown protein Potri.003G146100
[exp]
1.73 0.9063
AT2G31600 unknown protein Potri.017G035200
[exp]
4.47 0.9049
AT5G13950 unknown protein Potri.002G237800
[exp]
5.65 0.9052
AT5G48385 FRIGIDA-like protein (.1) Potri.015G110132
[exp]
9.16 0.8856
AT5G56210 WIP2 WPP domain interacting protein... Potri.011G169000
[exp]
12.24 0.8584
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
12.68 0.8995 ELF5.2
AT5G12200 PYD2 pyrimidine 2 (.1) Potri.009G067700
[exp]
13.19 0.8733
AT1G75420 UDP-Glycosyltransferase superf... Potri.005G118800
[exp]
13.26 0.8403

Potri.005G120600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.