Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36530 513 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 139 / 7e-38 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 137 / 4e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 129 / 1e-32 DNA photolyases;DNA photolyases (.1) AT5G13800 110 / 1e-26 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT1G13820 71 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 67 / 4e-12 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 61 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 54 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G10840 54 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063900 [exp] 144 / 3e-39 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 126 / 1e-32 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 121 / 6e-30 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.009G054800 [exp] 117 / 7e-29 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.010G158800 [exp] 77 / 1e-15 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120000 [exp] 61 / 5e-10 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G093500 [exp] 59 / 2e-09 AT5G39220 435 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 57 / 4e-09 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 57 / 4e-09 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028315 [exp] 560 / 0 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 500 / 2e-178 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 142 / 5e-39 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 143 / 3e-37 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10031137 [exp] 141 / 8e-37 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10005320 [exp] 118 / 2e-29 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10019755 [exp] 117 / 1e-28 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10031716 [exp] 104 / 4e-24 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016369 [exp] 71 / 2e-13 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10037072 [exp] 68 / 1e-12 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.005G121000.1 pacid=42803835 polypeptide=Potri.005G121000.1.p locus=Potri.005G121000 ID=Potri.005G121000.1.v4.1 annot-version=v4.1 ATGTCTTCTTCATCATGTTCTTTGTCACCTTCATTAAGGTCAAGGCTATTCAATTCCTCTGCTACAAGGTTTCTTGTACCACCAGCAAGACTAAATCAGT GCAGAAGCAGATGTGAAATGAACAGGAGAAGTTTTGCTTTCAGAGGAATTCTGGCTTCTGGGGTTTCAATCACGGGCTCTTCTTTAGCCACAGAGCCTAC TCAAGGGATGGAGAGATTGCCATTCAAGCCTGAGGGATATAATTTTTGGACATGGCGGGGTCACAAAATACATTATGTGGTACAAGGAGAAGGGCTTCCT ATTGTTCTCATTCATGGTTTTGGTGCTTCTTCATATCATTGGAGATACAACATACCTGAATTGGCCAAAAAGTATAAGGTTTATGCAGTAGACTTGCTGG GGTTTGGATGGAGTGAGAAAGCACTTATTGAGTATGATGCCATGGTGTGGAGGGATCAAGTAGTGGATTTCTTGAAGGAGATAGTGAAAGAGCCAGCTGT TTTAGTAGGAAACAGCCTTGGAGGCTTTACTGCTTTGGTTGCAGCAGTGGGCTTTCCTGATCAAGTTGTTGGGCTTGCACTACTAAATTCTGCTGGTCAG TTTGGGAATCCAAATGAAAAAATGGATGAGCCTGAGGAATCAATCTTGCAGAAATTTGTATTGAAGCCCCTGAAGGAAGTTTTCCAGCGTGTAGTTCTTG GATTTTTGTTTTGGCAAGCAAAGCAGCCAGCTCGCATTGAATCTGTTCTAAAGAGTGTTTATATAAATACCTCTAATGTAGACGACTACCTTGTGGAATC AATTACCATGCCAGCAGCTGATCCAAACGCTGGAGAAGTTTATTATAGATTGATGACTCGATTCATGCTGAATCAAAGCAAGTACACGTTAAACAGTGCA TTGAGTGAACTTAGATGCCCACTGCTATTGCTCTGGGGTGACTTAGACCCATGGGTAGGTCCTGCAAAGGCCAATCGAATCAAAGAGTTCTACCCAAATT CAACTCTTGTAAACTTAAAGGCTGGTCACTGCCCGCACGATGAAGTTCCAGAGCTTGTTAATAAATCCTTAATGGATTGGTTGTCATCTCTAAAACCTGA AGCCTCCCTTCAGACATTGTAA
AA sequence Show only first row Show all	>Potri.005G121000.1 pacid=42803835 polypeptide=Potri.005G121000.1.p locus=Potri.005G121000 ID=Potri.005G121000.1.v4.1 annot-version=v4.1 MSSSSCSLSPSLRSRLFNSSATRFLVPPARLNQCRSRCEMNRRSFAFRGILASGVSITGSSLATEPTQGMERLPFKPEGYNFWTWRGHKIHYVVQGEGLP IVLIHGFGASSYHWRYNIPELAKKYKVYAVDLLGFGWSEKALIEYDAMVWRDQVVDFLKEIVKEPAVLVGNSLGGFTALVAAVGFPDQVVGLALLNSAGQ FGNPNEKMDEPEESILQKFVLKPLKEVFQRVVLGFLFWQAKQPARIESVLKSVYINTSNVDDYLVESITMPAADPNAGEVYYRLMTRFMLNQSKYTLNSA LSELRCPLLLLWGDLDPWVGPAKANRIKEFYPNSTLVNLKAGHCPHDEVPELVNKSLMDWLSSLKPEASLQTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36530			alpha/beta-Hydrolases superfam...		Potri.005G121000 [exp]	0	1
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	3.74	0.9663
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	4.89	0.9636
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	5.29	0.9582
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.004G085400 [exp]	5.47	0.9614	Pt-CYTGS.4
AT5G65660			hydroxyproline-rich glycoprote...		Potri.019G055500 [exp]	8.24	0.9452
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	8.36	0.9628	FTSH2.2
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	8.48	0.9518
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142301 [exp]	11.00	0.9485
AT1G74640			alpha/beta-Hydrolases superfam...		Potri.017G115100 [exp]	12.12	0.9428
AT4G11410			NAD(P)-binding Rossmann-fold s...		Potri.003G128700 [exp]	12.64	0.9445

Compare expression of checked genes

Potri.005G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.