Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18280 504 / 4e-179 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 451 / 1e-157 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G47270 432 / 2e-150 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G25280 414 / 1e-142 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 412 / 5e-142 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G43640 390 / 1e-133 TUB AtTLP5 tubby like protein 5 (.1) AT3G06380 370 / 2e-126 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 369 / 9e-126 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 339 / 3e-114 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 61 / 8e-10 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023400 [exp] 721 / 0 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 476 / 2e-167 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 472 / 6e-166 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G192300 [exp] 447 / 4e-156 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 441 / 8e-154 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 438 / 2e-152 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 427 / 1e-148 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 426 / 4e-148 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 357 / 3e-121 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014299 [exp] 597 / 0 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10028309 [exp] 577 / 0 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10041757 [exp] 574 / 0 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10026007 [exp] 572 / 0 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10033209 [exp] 474 / 5e-167 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 469 / 9e-165 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010645 [exp] 467 / 5e-164 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10010833 [exp] 466 / 6e-164 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10028579 [exp] 431 / 1e-149 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 429 / 6e-149 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.005G121600.2 pacid=42804687 polypeptide=Potri.005G121600.2.p locus=Potri.005G121600 ID=Potri.005G121600.2.v4.1 annot-version=v4.1 ATGTCCTTCAAAAGCATCATGCGTGAATTCAAGGAAATAAAAGAGGGGATTGGAAGCATATCAAGGCGAGGAGTTGAAGGGAAACATTGGTGTGGCAGGG TGAGGTCACATATTGCACCAGATGAAACACGAGAAGAAACTGATCAGATTGACCAGGGCCAGTGGGCGAATCTACCGCCAGAATTGCTTTTGGATATCAT TATGAGGTTAGAAGAGAGTGAGTCCTCATGGCCTGCTCGTGTCGTCGTTGTTCATTGTGCTTCAGTCTGTAGATCATGGAGAGAAATTACAAAAGAGATT GTAAAAACTCCTGAGCAATGTGGGCGGCTGACGTTTCCCATATCATTGAAGCAGCCTGGTCCTCGTGAGTCGCCCATACAGTGCTTTATTAAGAGGGATA ATGCAACTTCTACATTTCTGTTGTACTATGGTCTGGTGCCTTCTGGGGGTGAGAATGATAAGTTGCTCTTAGCAGCTAGAAAGATCAGAAGGGCAACATG CACAGACTTCATAGTATCTTTGGTTTCAGATGATTTTTCTCGGGCCAGCAACACATATGTTGGTAAATTGAGGTCCAACTTTTTGGGAACCAAGTTCACC ATGTATGATAGTGAACCTACATTTGAAGTGCCAAGGCAACTGGCAAGCCGGACAAGTCGTAGATTCAATCCCAGGCAGGTGTCTCTGAGACTGCCTGCAT GTAACTACTGTATAGCTACTATCACGTATGAGCTCAATGTTCTCCGCTCAAGAGGACCGAGGAGAATGCATTGCATAATGCACTCTATTCCAATGTCTTC CATTGAGGAGGGGGGCACTGTCCAAACACTAACATCAATACCAGAGGCATTTAACGGCCAATTTCCTCACCTGTCAAGTTCAATAGGGAAGGAATTGGTC TCAGATAATAGTTCTGCAAGCCCCTCTCGGTCACCAGTATTAGCCCAAGGTTCAGAAGAGCTCCTTGTTCTTAAAAACAAGGCCCCTAGATGGCATGAGC AACTACAGTGCTGGTGCCTAAATTTCAGAGGGCGTGTCACTGTTGCTTCCGTTAAGAACTTCCAACTTGTTGCTAGTGCTGAACCATCCCACAATGTGCC TGCTGCAGATCAAGAAAGGGTAATTTTACAATTTGGAAAAATTGGAAAAGACATCTTCACGATGGATTATTTCTACCCGCTTTCAGCATTCCAAGCCTTT GCGATCTGCCTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA
AA sequence Show only first row Show all	>Potri.005G121600.2 pacid=42804687 polypeptide=Potri.005G121600.2.p locus=Potri.005G121600 ID=Potri.005G121600.2.v4.1 annot-version=v4.1 MSFKSIMREFKEIKEGIGSISRRGVEGKHWCGRVRSHIAPDETREETDQIDQGQWANLPPELLLDIIMRLEESESSWPARVVVVHCASVCRSWREITKEI VKTPEQCGRLTFPISLKQPGPRESPIQCFIKRDNATSTFLLYYGLVPSGGENDKLLLAARKIRRATCTDFIVSLVSDDFSRASNTYVGKLRSNFLGTKFT MYDSEPTFEVPRQLASRTSRRFNPRQVSLRLPACNYCIATITYELNVLRSRGPRRMHCIMHSIPMSSIEEGGTVQTLTSIPEAFNGQFPHLSSSIGKELV SDNSSASPSRSPVLAQGSEELLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASAEPSHNVPAADQERVILQFGKIGKDIFTMDYFYPLSAFQAF AICLSSFDTKPACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.005G121600 [exp]	0	1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	6.00	0.7084
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	9.11	0.7149
AT5G07900			Mitochondrial transcription te...		Potri.004G012900 [exp]	16.00	0.6834
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	16.88	0.6818
AT3G22510			Pre-rRNA-processing protein TS...		Potri.010G086800 [exp]	23.36	0.6675
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	24.18	0.6629
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	24.45	0.6675
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	34.14	0.6732
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002700 [exp]	36.00	0.6816
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	40.62	0.6743

Compare expression of checked genes

Potri.005G121600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.