Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18290 319 / 1e-112 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023500 [exp] 343 / 4e-122 AT2G18290 314 / 9e-111 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028308 [exp] 349 / 2e-124 AT2G18290 343 / 4e-122 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1) Lus10041756 [exp] 325 / 3e-115 AT2G18290 346 / 3e-123 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF03256 [poplar] [flax] ANAPC10 Anaphase-promoting complex, subunit 10 (APC10)
Representative CDS sequence Show only first row Show all	>Potri.005G121700.1 pacid=42804835 polypeptide=Potri.005G121700.1.p locus=Potri.005G121700 ID=Potri.005G121700.1.v4.1 annot-version=v4.1 ATGGCAACAGAATCATCGGAAGGAGAAGAAGAAGGGAAGATCACAGGAGGAAACAAGCACTTGGTAATTGAAGATGATCTTAGAGAAATGGGAAAAAAAG CTGCTTGGAGTGTTAGTTCTTGCAAACCTGGAAATGGGGTCTCTTCTCTTAGAGATGACAATCTTGACACTTATTGGCAGTCAGATGGAGCACAACCGCA TTTGGTTAATATTCAATTTCAGAAGAAAGTGAAGCTGCAGTTAGTTGTTCTTTACGTGGATTTTAAGCTGGATGAGAGTTATACACCTAGTAAGATTTCG ATTCGTGCTGGTGATGGTTTTCATAATTTGAAGGAGATTAAGACTATGGAGCTTGTGAAGCCAACTGGGTGGGTTTATCTGTCCTTATCTGGAAATGACC CTAGGGAAACATTTGTTAACACATTTATGTTGCAAATTGCTGTGCTATCGAATCATCTTAATGGAAGGGATACCCATGTACGCCAGATCAAAGTTTATGG ACCTCGACCGAACCCTTTTCCGCATCAGCCTTTTCAATTTACTTCAAGAGAGTTCATTATGTACTCCTCTGTGAGATGA
AA sequence Show only first row Show all	>Potri.005G121700.1 pacid=42804835 polypeptide=Potri.005G121700.1.p locus=Potri.005G121700 ID=Potri.005G121700.1.v4.1 annot-version=v4.1 MATESSEGEEEGKITGGNKHLVIEDDLREMGKKAAWSVSSCKPGNGVSSLRDDNLDTYWQSDGAQPHLVNIQFQKKVKLQLVVLYVDFKLDESYTPSKIS IRAGDGFHNLKEIKTMELVKPTGWVYLSLSGNDPRETFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPFPHQPFQFTSREFIMYSSVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	0	1
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	5.00	0.6831
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.008G161500 [exp]	6.08	0.5724
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	7.07	0.6625	ORG4.2
AT4G32560			paramyosin-related (.1.2.3)		Potri.006G247900 [exp]	7.34	0.6453
AT2G39500			unknown protein		Potri.008G051100 [exp]	13.11	0.6302
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	25.92	0.5969
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.004G089300 [exp]	26.07	0.5926
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	27.92	0.6120
AT2G04740			ankyrin repeat family protein ...		Potri.014G163200 [exp]	29.39	0.5775
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	32.71	0.6148

Compare expression of checked genes

Potri.005G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.