Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34530 177 / 3e-52 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT2G18300 172 / 2e-50 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36540 168 / 4e-49 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT3G07340 158 / 5e-44 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 158 / 1e-43 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 154 / 2e-43 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 150 / 9e-43 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT1G10120 150 / 1e-41 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 150 / 1e-40 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 144 / 3e-40 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023600 [exp] 548 / 0 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G156000 [exp] 215 / 7e-66 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 208 / 6e-63 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G136100 [exp] 161 / 2e-44 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 158 / 3e-43 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 158 / 4e-43 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 157 / 6e-43 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G040000 [exp] 149 / 1e-42 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.006G057200 [exp] 151 / 3e-42 AT3G57800 280 / 2e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026008 [exp] 207 / 3e-64 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014300 [exp] 173 / 8e-51 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 166 / 4e-48 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 164 / 3e-47 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10029110 [exp] 162 / 4e-45 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 161 / 1e-44 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030807 [exp] 154 / 3e-44 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013284 [exp] 153 / 6e-44 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10003172 [exp] 150 / 5e-42 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040506 [exp] 150 / 6e-42 AT3G57800 275 / 3e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G121850.4 pacid=42804230 polypeptide=Potri.005G121850.4.p locus=Potri.005G121850 ID=Potri.005G121850.4.v4.1 annot-version=v4.1 ATGCTGTCTCAAAAACACACCTTTTGCATGGACATGACTGTGTTAGAAAGACAGCAAGCAAGGTTCAAATGGCTGCTGCTGCTGCAGCAGCAGCAGAACA ATTATGTGAACCAATACAATTCCCTTGAATCATGTTCGATGCCTACTGACCAGTTTCATGGTTTCGTTGATCATGAGTCAATGAATGGAGATATAATTGA TTGGAAGAAGAAGCCTGAAATGTATCTGGGGAACAATGATTTGCCAAAATATGGTGGTTTTTCATTAAATGGCACTGGGTTGGTTGCTAATAATAGGATG GATTTTGGACAAGCAGAGGTAGCGGGATCTGTTGAGATTGATCGTTGTCTTTCAAGGACTTCTAGTTGCCAAATTGGGGTGGTGGAGGCTGCGAAAATAG AGGAGAAGGTGGTAGCAATAAAGGTGGCAGAAGATTTGACCTTGATGGAAAATAAGCAATCCAACAATGGTAATGGAGACAATTCAAATAAGAGAAAAGC AGAGTTTGTTGCAGCAGAAGAGTGTGACAATAAGATTAAAGAAGTAGAAGTCGACTCCAAGGTCAAAGAGAAAAGCAGTATAGGAATTTCTGCAGATTTT TCAAAGGAAAATCAGCAGACTTCAGCTTTACCGAAGACAGATTATATTCATGTCCGGGCACGTCGTGGCCAGGCTACTGACAGTCACAGCTTAGCTGAAA GAGCCAGGAGGGAAAAGATTAGTAAGAAAATGAAAAGTCTGCAAGATCTAGTCCCTGGATGCAACAAAATAACAGGCAGGGCCGGAATGCTTGATGAAAT CATCAATTATGTCCAATCTCTTCAAAGACAAGTAGAGTTCTTATCCATGAAACTTGCTGCTCTAAACCCAAGGCCAGAATTCAATATCGACAACTTTTCT GGGAAAGAGTTTTCTGCTTACGTAGAGAGTTTTCCAGCAGCCAGTATGCCATCAACAATTTCCAATTTGACCCACATTCAACCAAATCTAATGCAACGAC AGGCAACAAGCAGCGAGCCAAAAGCTTTGACAAATCCTCCCCAACTTGTTCCAGTAAAAACTACAAGCTCTTCAGCATTCATCAATGACCTATGTCTTGA TCCATTAGCTCAAGTTCAACCTTTTTGGGATGCTGACTCACAAAACCTTCAAAATCTGGGGTTCAATTAA
AA sequence Show only first row Show all	>Potri.005G121850.4 pacid=42804230 polypeptide=Potri.005G121850.4.p locus=Potri.005G121850 ID=Potri.005G121850.4.v4.1 annot-version=v4.1 MLSQKHTFCMDMTVLERQQARFKWLLLLQQQQNNYVNQYNSLESCSMPTDQFHGFVDHESMNGDIIDWKKKPEMYLGNNDLPKYGGFSLNGTGLVANNRM DFGQAEVAGSVEIDRCLSRTSSCQIGVVEAAKIEEKVVAIKVAEDLTLMENKQSNNGNGDNSNKRKAEFVAAEECDNKIKEVEVDSKVKEKSSIGISADF SKENQQTSALPKTDYIHVRARRGQATDSHSLAERARREKISKKMKSLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEFLSMKLAALNPRPEFNIDNFS GKEFSAYVESFPAASMPSTISNLTHIQPNLMQRQATSSEPKALTNPPQLVPVKTTSSSAFINDLCLDPLAQVQPFWDADSQNLQNLGFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	0	1
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	3.74	0.9706
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	3.87	0.9681
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	5.29	0.9705	Lhcb3-1,LHCB3.2
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	5.47	0.9674	2,Pt-LHCB2.1
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	6.00	0.9591
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152600 [exp]	6.32	0.9674
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	6.92	0.9520	DFL2.1,GH3-11
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177333 [exp]	9.48	0.9638
AT2G14830			Regulator of Vps4 activity in ...		Potri.011G122800 [exp]	10.39	0.9565
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	13.49	0.9564

Compare expression of checked genes

Potri.005G121850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.