Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) AT1G24330 294 / 3e-87 ARM repeat superfamily protein (.1) AT1G27910 274 / 5e-80 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 234 / 1e-65 ARM repeat superfamily protein (.1.2) AT3G46510 111 / 6e-25 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G07360 106 / 6e-24 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G28830 107 / 2e-23 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 102 / 4e-22 PUB15 Plant U-Box 15 (.1) AT1G23030 100 / 1e-21 PUB11 ARM repeat superfamily protein (.1) AT3G54850 100 / 2e-21 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023700 [exp] 1170 / 0 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G228100 [exp] 510 / 6e-170 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 303 / 2e-90 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.010G058000 [exp] 300 / 2e-89 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 117 / 4e-27 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 110 / 7e-25 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 105 / 3e-23 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G226500 [exp] 102 / 2e-22 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G035700 [exp] 101 / 5e-22 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028307 [exp] 708 / 0 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 680 / 0 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10015801 [exp] 301 / 9e-90 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 298 / 1e-88 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 295 / 2e-87 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 294 / 5e-87 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 110 / 1e-24 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 107 / 1e-23 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 107 / 1e-23 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 106 / 6e-23 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.005G122100.4 pacid=42804767 polypeptide=Potri.005G122100.4.p locus=Potri.005G122100 ID=Potri.005G122100.4.v4.1 annot-version=v4.1 ATGAATAAGAATTTTAGTCACAGAGATTCTCTGTGGGGTGTTAACCTTCATCAACATGTGCTGCTTTTAAATATTGCTGTCTCTTTACTTTGCTTCTCTA CTCCAGGGCTGCAAGGAGGCTACCTTGGCTACTTGAATTCTGCTTGTAATTCAAGGTGCTCTAAAGATACTGTTAGAATTGTGTATGTTTTCAAGCAAAG GAAGGAGCTTTTTATATCTGTTGTGGTTTCCAAATCTCTAGATCCAGCATACTCCCTTTGCATGGGAACTGATGCTGCTGAAGTAGTGGAGACACTGCCA TTTCCTTATTCCTTCAAGGTGCATCACTCCATGTGTACAGAGTTGATGAAGTTGGTCGATAAAGTTTCAAAAACATTTCTAGAAATTGAAGCAGCTCGAC CTCGATGCTCATCAGGAATACAGGCACTATGCTTGTTAAACAAAGCACTTGAGAAAGCCAGGCAACATCTTCAGTACTGTTGCGACTCTAGCAAACTATA TTTGGCAATAACGGGGGATGCTATTGTCTCAAAATGTCAAAGATCAAGGAACTTGTTGGAACAGACTTTAGCCCAAATGCAAACAATGGTTCCAATAATG TTGGCTGCCGAGATATCTCAAATTATTGATGATCTTAGGGCAGCAATGTTTATGCCGGATTCCTCTGTAGAAGAGGCTGGTAAAGCCATGCGTGAATTGC TCAAGCAGGGCAATTTAGGATCTCAGTCTATGGTGAATTCTGAAATCAAGGCTATTCAACTTGCAGCTTCGAGACTGCATATTACATCTCGAAAGGCCAT ACTGATAGAGAAAAGATCTATTAAGAAGCAGCTAGATAAGGATGGTGGCAATAAACCCGGAAAAAGGAGTATCTTAAATTACCTTATGTTTCTATTGAAG AAGTATGGAAACTTACTCATTGAAGAGCAAACAGAGACTCCCAAAGCTCAGCATGAAGGATTATTTTCACTGAAGAACCCCAGTGATACTTCTTTCCATC GACAATACAATCAAGTAGAGTCTTGTGTAGGATGTGAGCAGTATGAGACTCAAACTGACATGTTTAGTAGAGCTACACCCCCTGAAGACTTTAAGTGTCC TATATCTATGAGAGTGATGTACGATCCTGTTGTTATTGCTTCTGGACAAACATTTGAAAGGATGTGGATACAGAAGTGGTTTGATGAGGGTAATGATACA TGCCCAAAAACCAAAGTGAAACTAGCTCATTGTGCATTGATTCCAAACACAACCATTAAAGACCTAATATCAAAGTGGTGTGTGAAGTATGGAATCACTA TTCATGACCCAAGCATTCGAGCATTGAGGTTATTGGACATTTCTATTAATTCGATCGCTAGTTTAAGCAGTTCCATGAATGATCTAAACCTTCCACTGGA TATTAGCAATATATCCCTGGGGTCTTTAGATGCTAGTTACAGTTCAGATGCTTCACGATCTAAGGTTGCAAGTGGGTCAAATTTGATTTTGGTACAGGAC AATGATTATTCCTGTGAATGCCATTCTTATACAAATATGAATCAGCAAGACTTGAAGTTTCTGTCTGGACTTGCTGAGCTTCCCTGGGATTCTCAATGCA ATATGGTTGAAGATGTCAAGGGCTGTTTGCAGTGTAATGATCAAGTTTGCCCTTCTCTATCATCTGAGAATTTTGTCGAACCTCTATTTAGATTCCTGAG AGATGCACGTGAACAACAAGATATAGGAGCTCAGAGAGTTGGATTTCACTTGTTGCTTTCATTTGTCAGCAAAAACAGAAGTGGAATATCATACTTGCAT GAAGAGGCCTTTAATCTGTTGTCATCATTCCTTGATTCTGAAGTAATTGAAGAGGTTCTTGCCATATTTGAAGTGCTGTCTGGCTACCCATATTGCAGAT CTAAAATCACTGCATTTGGTGCTCTTGTTTCTATCCGAAAGATGCTTGACTCCCATAACAAAGAATTCCAAGAACTGGCCATTAAAATTCTACATAATTT GTCCTCAAACGATGATATTTGTTCCCAAATTGCATCTATGGAGTGCATCTCAAAATTGGTTCCTTTGATGAAGGATGGGAATCTCTCAAGATATTCTATA GTTTTATTAAGAAATTTGTGTGATCTTGAAGTGGCTAGGGTTTCTGTTGCTGAGACAAATGGATGTATTGCTTCTATTGCTGAGCTACTTGAGAGTGGTA GTCAGGAGGAACAAGAGCATGCAGTGGCCATTCTGCTTTTGTTATGCTCTCAGCGTCTTCAATATTGCCAGTTGGTGATGGATGAAGGTGTTATCCCTTC CCTTGTTGATATATCTATCAATGGAACTGACAAAGGGAGAGCAAGTGCTTTGGAATTGCTTCGGCAGTTAAGAGACATCGAATATGATAATGATCAAGAA AGCTTTTGCTCTGATCTTGTTACTGATAGAGATGCTGACCACCAAACAAGAGAAAAGAAATCATCTCCCAAGACATCTGGATTTCTCAAGAATTTATCAG TGTTCTCTATACGCAGTTCTGTTGCATCAAAAAAGAAGAGATGA
AA sequence Show only first row Show all	>Potri.005G122100.4 pacid=42804767 polypeptide=Potri.005G122100.4.p locus=Potri.005G122100 ID=Potri.005G122100.4.v4.1 annot-version=v4.1 MNKNFSHRDSLWGVNLHQHVLLLNIAVSLLCFSTPGLQGGYLGYLNSACNSRCSKDTVRIVYVFKQRKELFISVVVSKSLDPAYSLCMGTDAAEVVETLP FPYSFKVHHSMCTELMKLVDKVSKTFLEIEAARPRCSSGIQALCLLNKALEKARQHLQYCCDSSKLYLAITGDAIVSKCQRSRNLLEQTLAQMQTMVPIM LAAEISQIIDDLRAAMFMPDSSVEEAGKAMRELLKQGNLGSQSMVNSEIKAIQLAASRLHITSRKAILIEKRSIKKQLDKDGGNKPGKRSILNYLMFLLK KYGNLLIEEQTETPKAQHEGLFSLKNPSDTSFHRQYNQVESCVGCEQYETQTDMFSRATPPEDFKCPISMRVMYDPVVIASGQTFERMWIQKWFDEGNDT CPKTKVKLAHCALIPNTTIKDLISKWCVKYGITIHDPSIRALRLLDISINSIASLSSSMNDLNLPLDISNISLGSLDASYSSDASRSKVASGSNLILVQD NDYSCECHSYTNMNQQDLKFLSGLAELPWDSQCNMVEDVKGCLQCNDQVCPSLSSENFVEPLFRFLRDAREQQDIGAQRVGFHLLLSFVSKNRSGISYLH EEAFNLLSSFLDSEVIEEVLAIFEVLSGYPYCRSKITAFGALVSIRKMLDSHNKEFQELAIKILHNLSSNDDICSQIASMECISKLVPLMKDGNLSRYSI VLLRNLCDLEVARVSVAETNGCIASIAELLESGSQEEQEHAVAILLLLCSQRLQYCQLVMDEGVIPSLVDISINGTDKGRASALELLRQLRDIEYDNDQE SFCSDLVTDRDADHQTREKKSSPKTSGFLKNLSVFSIRSSVASKKKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Potri.017G105201 [exp]	2.00	0.8145
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	2.64	0.7715
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	7.14	0.7509
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.007G062700 [exp]	9.16	0.7852
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	10.95	0.8064
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	12.64	0.7192
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.005G172200 [exp]	13.03	0.7661	MEKK1.1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	13.85	0.7537	Pt-MEKK1.2
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	19.77	0.7324
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.010G206400 [exp]	20.97	0.7617

Compare expression of checked genes

Potri.005G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.