Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 443 / 8e-158 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 422 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 167 / 1e-49 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 164 / 4e-48 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 155 / 7e-45 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 152 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 145 / 2e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 130 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 126 / 8e-34 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 55 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024400 [exp] 567 / 0 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 358 / 3e-124 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 348 / 2e-120 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 337 / 4e-116 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 330 / 6e-113 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 315 / 3e-107 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 306 / 8e-104 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 162 / 8e-48 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 150 / 7e-43 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 456 / 1e-162 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 242 / 8e-79 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10028302 [exp] 169 / 5e-51 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 158 / 3e-46 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 154 / 3e-44 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 152 / 9e-44 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 143 / 5e-40 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 139 / 6e-39 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 139 / 1e-38 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 133 / 1e-36 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.005G122600.2 pacid=42805375 polypeptide=Potri.005G122600.2.p locus=Potri.005G122600 ID=Potri.005G122600.2.v4.1 annot-version=v4.1 ATGGTGAACCTTGTGGCAGCACAGACGCCATTATTGCATGGCCTAATGAAAATGGCAGGAGTGCAACCTCACCGAGTAGAGATTGAGCCTGGCACGGTCA TGAACTTTTGGGTTCCAAATGAAACCGTCAAGAAACCTCAAAAAGGTGAAAAGAACAAGACCCCAACCTTAACCAAACCAAACAAACCTGTAATAGTTCT AGTCCATGGCTTTGCTGCTGAAGGTATTGTCACTTGGCAATTCCAAGTTGGTGCCTTGACCAAAAAGTATTCAGTTTATATCCCTGACCTTCTTTTCTTC GGTAGCTCAATCACTGATAAAACAGACCGTTCGCCAACGTTTCAGGCTGAAACATTGGTGAAAGGTCTTAAGAAGTTCGGAATAGAGAAGTGTATTGTAG TGGGGTTTAGCTATGGTGGCATGGTGGCGTTTAAGATGGCTGAGTTGTATCCTGACCTGGTTCAAGCCATGGTCATATCTGGTTCAATCCTGGCAATGAC TGACTCGATCAGTGAAGCAACTCTAAGTGAACTTGGGTTCAAGTCCTCCTCGGAGCTTTTGCTGCCTGATTCTGTTAAAGGTCTTAAAACACTACTTTCT GTTGCTACTTACAAGAAGCTTTGGTTCCCAAATAGGCTTCACAAAGACTACCTTGAGGTGATGTTCACTAACAGAAAAGAGAGAGCTGAACTTCTAGAGG GGTTAGTCATCAACAATAAAGACCCCACAATCCCTAGGTTTGTACAGAAGATACATCTCTTATGGGGGGAGAACGACCAAATCTTCAATCTGGGGCTCGC ACAGAACATGAAAGGGCAACTAGGCGAGACGGCAACATTTCAGGGCATACAGAAGGCAGGCCACTTAGTTCACCTGGAACGTCCATGTGTCTATAATAGA TGTCTCAAGCGATTTCTTACTTCGTTGCTTGAAAATGGAGTGCAGAAGTGA
AA sequence Show only first row Show all	>Potri.005G122600.2 pacid=42805375 polypeptide=Potri.005G122600.2.p locus=Potri.005G122600 ID=Potri.005G122600.2.v4.1 annot-version=v4.1 MVNLVAAQTPLLHGLMKMAGVQPHRVEIEPGTVMNFWVPNETVKKPQKGEKNKTPTLTKPNKPVIVLVHGFAAEGIVTWQFQVGALTKKYSVYIPDLLFF GSSITDKTDRSPTFQAETLVKGLKKFGIEKCIVVGFSYGGMVAFKMAELYPDLVQAMVISGSILAMTDSISEATLSELGFKSSSELLLPDSVKGLKTLLS VATYKKLWFPNRLHKDYLEVMFTNRKERAELLEGLVINNKDPTIPRFVQKIHLLWGENDQIFNLGLAQNMKGQLGETATFQGIQKAGHLVHLERPCVYNR CLKRFLTSLLENGVQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.005G122600 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G020700 [exp]	1.41	0.9957
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048900 [exp]	2.23	0.9891
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G008666 [exp]	3.16	0.9930
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G029000 [exp]	4.24	0.9928
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G155300 [exp]	4.47	0.9870
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080333 [exp]	5.29	0.9906
AT1G30700			FAD-binding Berberine family p...		Potri.001G462532 [exp]	7.48	0.9882
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	8.00	0.9879
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	9.89	0.9851
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	11.22	0.9888

Compare expression of checked genes

Potri.005G122600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.