Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55230 64 / 3e-11 Family of unknown function (DUF716) (.1) AT5G19870 59 / 1e-09 Family of unknown function (DUF716) (.1) AT1G55240 54 / 4e-08 Family of unknown function (DUF716) (.1) AT1G32120 42 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216600 [exp] 62 / 1e-10 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 60 / 4e-10 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 60 / 5e-10 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 57 / 3e-09 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.010G067000 [exp] 46 / 1e-05 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 45 / 3e-05 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.002G237200 [exp] 44 / 0.0001 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028821 [exp] 264 / 5e-87 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10017462 [exp] 197 / 3e-60 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10039191 [exp] 69 / 4e-13 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 64 / 3e-11 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10011779 [exp] 57 / 3e-09 AT1G32120 69 / 9e-13 unknown protein Lus10041505 [exp] 51 / 6e-07 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10012588 [exp] 49 / 2e-06 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10014806 [exp] 44 / 9e-05 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 44 / 0.0001 AT1G32120 429 / 3e-142 unknown protein Lus10013105 [exp] 41 / 0.0003 AT3G01360 53 / 6e-09 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.005G122800.1 pacid=42803878 polypeptide=Potri.005G122800.1.p locus=Potri.005G122800 ID=Potri.005G122800.1.v4.1 annot-version=v4.1 ATGGGGCTATTCTCAATGACTTTAGCTGGTAGTGGTTTTATTCTGATAGGTGCATGGGAATCTCTCACATCCTCAACCGCAAGCCAAAACCGGAACTCAG TTTCAAATCCATCTTCACCGCTGAAGCAAACACCAAAATCAGCGACTCAAAGAAACTCAAACTCATCTTCCTCTTCTGCGAACTATATCACTGTCACCAT CTTCTCCCTTCTCTTTATTGTCAACTCTCTAATCTCCTTCTTCAACGCTGTTAACTCACGAGATCAAGTTGGCTCAGCCCTTCAACTACAAATCCTAGCT GTTGCAGCTCTTTTCTTGTTATACTCAGTTTTGGGTCTTTTATCGAATTTTTCAAGTTTTGTTCGGTTCCCTTCTTCGATCCTTAATTTGATTGTTTTGT TCGCATTTGTTGAAGAGTTTCTTCTGTTTTATATGCAAAGAAAGGACCCAAGTGGAATAGAGAACAGGTATTTCGATCTTATGCTTGTGCCCATTTTGAT ATGTGTGGTTTCTACGACTCTTGAACTGAAATCACCATGGAAATCGAATGATTATCCAAGAATAGCACGTGGGGTTGGGTTGATTTTGCAAGGGATGTGG ATTGTGCAAATGGGTCTTTCTTTTTACACCAATTTGATTGTTCATGGTTGCTCTTTGCACGAAAAGAGTAGAGGGAATTACAGTATCAAATGTAAAGGAC ATCCTGAGTATCATAGAGCAAGAGGAATCGCTACTCTTCAATTCAATTGCCATCTTGCTCTGCTAGTGATTTCCGCGATGAGTGTCTACTCAGTCATGGC TAAAAATAACGGGGCTCGTGGTGATTCGTATAAACCTCTTGGAGCAGAGATGCAGCAAATGGAGAATCATGGCATGTTCACTTTGGATTCTGATGATGAT GAGATTAGAGAAGAAGAGGATGTTACTATGAAGAAAGGCGCTGTGGTGGCTGTTAATGGTTTTGGATCTCATGAATGA
AA sequence Show only first row Show all	>Potri.005G122800.1 pacid=42803878 polypeptide=Potri.005G122800.1.p locus=Potri.005G122800 ID=Potri.005G122800.1.v4.1 annot-version=v4.1 MGLFSMTLAGSGFILIGAWESLTSSTASQNRNSVSNPSSPLKQTPKSATQRNSNSSSSSANYITVTIFSLLFIVNSLISFFNAVNSRDQVGSALQLQILA VAALFLLYSVLGLLSNFSSFVRFPSSILNLIVLFAFVEEFLLFYMQRKDPSGIENRYFDLMLVPILICVVSTTLELKSPWKSNDYPRIARGVGLILQGMW IVQMGLSFYTNLIVHGCSLHEKSRGNYSIKCKGHPEYHRARGIATLQFNCHLALLVISAMSVYSVMAKNNGARGDSYKPLGAEMQQMENHGMFTLDSDDD EIREEEDVTMKKGAVVAVNGFGSHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01360			Family of unknown function (DU...		Potri.005G122800 [exp]	0	1
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	10.77	0.8562	Pt-WRKY6.1
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	12.08	0.8539	PtrAOH3,ATH2.3
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	17.23	0.8450
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G215600 [exp]	18.16	0.8362
AT5G47390	MYB		myb-like transcription factor ...		Potri.001G155300 [exp]	19.79	0.7303
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Potri.012G069800 [exp]	20.49	0.8416	PtrATH2,Pt-ATH1.2
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.004G124600 [exp]	20.78	0.8022
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	21.02	0.8256
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.004G117800 [exp]	22.00	0.8259
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	23.45	0.7116

Compare expression of checked genes

Potri.005G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.