Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36630 1382 / 0 EMB2754 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) AT1G22860 45 / 0.0002 Vacuolar sorting protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025700 [exp] 1758 / 0 AT4G36630 1380 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Potri.001G081900 [exp] 62 / 3e-09 AT1G22860 1120 / 0.0 Vacuolar sorting protein 39 (.1) Potri.003G148700 [exp] 54 / 7e-07 AT1G22860 1144 / 0.0 Vacuolar sorting protein 39 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026018 [exp] 1404 / 0 AT4G36630 1347 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Lus10014310 [exp] 1390 / 0 AT4G36630 1352 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS CL0020 [poplar] [flax] PF00780 [poplar] [flax] CNH CNH domain CL0020 [poplar] [flax] TPR PF10366 [poplar] [flax] Vps39_1 Vacuolar sorting protein 39 domain 1 CL0020 [poplar] [flax] PF10367 [poplar] [flax] Vps39_2 Vacuolar sorting protein 39 domain 2
Representative CDS sequence Show only first row Show all	>Potri.005G123000.1 pacid=42805686 polypeptide=Potri.005G123000.1.p locus=Potri.005G123000 ID=Potri.005G123000.1.v4.1 annot-version=v4.1 ATGGTACACAATGCCTACGATTCCTTCGAGCTCCTCACAAATTGCCCAAACAAAATTGATGCAATCGAATCCTACGGTTCAAAGCTCCTCATCGCTTGCT CCGATGGAGCTCTCAGAATCTACGCTCCAGTGTCCGCTATCTCCGACAAATCTCCACCGTCTGATTACCATAACCACGGTGATCAACTTCGAAAGGAACC GTATTCACTGGAGAGAACGGTAAACGGATTCTCTAAAAAGCCGATGTTGTCAATGAAAGTATTGGCTTCAAGAGAACTGCTCCTATCGCTCTCTGAATCT ATCGCGTTTCATCGATTGCCAAATTTGGAGACCATTGCGGTGCTTACTAAAGCTAAAGGTGCTAACGTGTTTGATTGGGATGATAAGCGAGGGTTTCTGT GCTTCGCCAGGCAAAAGAGAGTCTGCATTTTTAGACATGACGGTGGAAGGGGATTTGTGGAGGTGAAAGATTTTGGAGTTTCAGATACAGTGAAGTCAAT GTCATGGTGTGGTGAGAACATATGTTTGGGAATTAGAAAGGAATATTGGATATTAAATTCAACAAATGGTGCATTGAGTCAGGTTTTTCCTTCAGGGAGA CTAGCTCCTCCATTAGTGGTATCTCTTCCTTCTGGGGAGCTTCTTCTTGGGAAGGATAACATTGGAGTCTTTGTGGACCAAAATGGCAAGCATCTCCAAG CAGAGAAAATTTGTTGGTCAGAGGCTCCTTCTCTTGTTGTCATTCAAAAGTCCTATGCAATTTCTCTGCTTCCAAGACGGATTGAGATCCGGTCTCTCCG AGTTCCATACTCATTGATACAAGCTTTTGTTCTTCAAAATGTTCGCCATCTTATTGAAAGCAACAACGCGATAATTGTTGCATTAAGCAATTCTGTCCGT GCGCTGTTCCCTGTTCCTCTTGGTGCACAGATTGTACAGTTGACAGCATCTGGAAATTTTGAGGAAGCCTTGGCCTTGTGCAAGCTGCTTCCACCAGAAG ATTCAAACCTTCGAGCTGCTAAGGAGGGTTCAATTCACATAAGATATGCACATTATCTTTTTGATAATGGGAGCTATGAGGAGGCTATGGAGCATTTCTT AGCATCTCAAGTAGATATCATCTATGTGCTTTCTTTGTACCCATCCATTGTTCTCCCCAAAACATCTTTGGTTCCAGAACGCGAGAAACTAATTGACATT TCTCAAGATGCTCCGTATCTCTCAAGAGGTTCCTGTGGATTGTCTGATATTATGGAACCCTCACCTCCAATCCACCTATCAGATTTTGATGAGCATTCGG CACTAGAGTCCAAGAAGATGAGCCATAATACTCTCATGGCTTTAATCAAGTACTTGCAGAAAAGAAGATTTGGCATAGTTGAAAAGGCCACTGCTGAGGG AACAGATGAGGTTGTTTTAGATGCTGTTGGAGATAATTATGGACCTTATGACTCTAATAGGTTTAAGAAATCCAACAAGGGTCGTGGTAACATTGCCATT AACTCAGGTGCCAGGGAAATGGCAGCAATATTGGACACGGCTCTTCTTCAAGCTCTTCTTCTTACAGGACAGACTTCAGCAGCTTTAGAATTATTGAAGG GTCTTAACTACTGTGACCTAAAAATATGCGAGGAGATTCTTCAAAAATGGAATCATTATACTGCTTTATTAGAACTCTACAAATGCAACGCCATGCACCG TGAAGCTCTTAAGCTTCTGCATCAATTAGTTGAAGAGTCAAAATCAAACCAGTCAAAGCCCGAGCTAAACCCAAAATTCAAGCCTGAATCTATTGTTGAA TATCTCAAGCCTCTGTGTTGGACTGATCCCATGCTTGTCTTGGAGTTTTCAATGCTTGTTCTCGAAAGCTGTCCCACACAAACTATTGAGCTACTTTTGT CTGGGAATATTCCGGCAGACTTGGTCAACTCTTATCTGAAGCAGCATGCTCCAAGCATGCAAGGCAGATATTTAGAACTGATGCTTGTGATGAATGAAAA TGGGATCTCTGGAAACCTACAAAATGAAATGGTGCAAATCTATCTCTCGGAAGTGCTTGATTGGCATGCCGAGTTGAATGCTCAAGAAAAATGGGATGAA AAGGCTTATTCACCAACACGGAATAAATTATTGTCTGCTTTGGAGAGCATCTCAGGGTATAACCCAGAGGCTTTGTTGAAACGGCTTCCAGCAGATGCAT TATATGAAGAGCGGGCACTTTTGTTGGGAAAAATGAACCAACATGAGCTTGCCTTATCTCTGTATGTTCACAAGCTTCATGTTCCTGATCTGGCATTATC CTACTGTGACCGTGTCTACGAGTCTGCAGCTCATCTACCATCTGCAAAATCTTCTGGCAATATATACCTAACTCTCTTGCAAATTTACCTCAACCCCAGG AAGACAACCATGAATTTTGAAAAGCGAATAACAAATCTAGTATCCTTTCAGAATACTAACGTTCCCAAGGTAAGTTCTGTGACCCCAGTAAAAGCTAAAG GAGGTCGTGCTACAAAGAAAATTGCTGCTATAGAGGGTGCAGAAGACTTACGAGTCAGTCCCAGTGGCACTGACAGTAGCAGGAGTGATGGTGATGCAGA TGAATTTGGTGATGAAGGGGGTTCTACTATTATGCTTGATGAGGTCCTCGATCTGTTGAGCAAAAGGTGGGACAGAATCAATGGAGCTCAGGCCCTCAAA CTCTTACCAAGGGAAACTAAATTACAGAATTTGCTTCCCTTTCTTGGACCTCTTCTAAAAAAATCCAGTGAAGCATACAGGAATCTCTCAGTAATCAAAA GCTTGAGGCAGAGTGAGAATCTGCAGGTGAGGGATGAAATGTACAGCCGTAGGAAAACAGTTGTCAAGATCACCAGTGATACTACCTGCTCTCTTTGCAA CAAGAAAATTGGAACGAGCGTTTTTGCAGTCTACCCCAATGGGAAAACAATCGTTCACTTCGTTTGCTTCAAAGATTCACAAAGTATAAAAGCTGTGGCC AAAGGATCGGCTCTAAGGAAGCGATGA
AA sequence Show only first row Show all	>Potri.005G123000.1 pacid=42805686 polypeptide=Potri.005G123000.1.p locus=Potri.005G123000 ID=Potri.005G123000.1.v4.1 annot-version=v4.1 MVHNAYDSFELLTNCPNKIDAIESYGSKLLIACSDGALRIYAPVSAISDKSPPSDYHNHGDQLRKEPYSLERTVNGFSKKPMLSMKVLASRELLLSLSES IAFHRLPNLETIAVLTKAKGANVFDWDDKRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVSDTVKSMSWCGENICLGIRKEYWILNSTNGALSQVFPSGR LAPPLVVSLPSGELLLGKDNIGVFVDQNGKHLQAEKICWSEAPSLVVIQKSYAISLLPRRIEIRSLRVPYSLIQAFVLQNVRHLIESNNAIIVALSNSVR ALFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQVDIIYVLSLYPSIVLPKTSLVPEREKLIDI SQDAPYLSRGSCGLSDIMEPSPPIHLSDFDEHSALESKKMSHNTLMALIKYLQKRRFGIVEKATAEGTDEVVLDAVGDNYGPYDSNRFKKSNKGRGNIAI NSGAREMAAILDTALLQALLLTGQTSAALELLKGLNYCDLKICEEILQKWNHYTALLELYKCNAMHREALKLLHQLVEESKSNQSKPELNPKFKPESIVE YLKPLCWTDPMLVLEFSMLVLESCPTQTIELLLSGNIPADLVNSYLKQHAPSMQGRYLELMLVMNENGISGNLQNEMVQIYLSEVLDWHAELNAQEKWDE KAYSPTRNKLLSALESISGYNPEALLKRLPADALYEERALLLGKMNQHELALSLYVHKLHVPDLALSYCDRVYESAAHLPSAKSSGNIYLTLLQIYLNPR KTTMNFEKRITNLVSFQNTNVPKVSSVTPVKAKGGRATKKIAAIEGAEDLRVSPSGTDSSRSDGDADEFGDEGGSTIMLDEVLDLLSKRWDRINGAQALK LLPRETKLQNLLPFLGPLLKKSSEAYRNLSVIKSLRQSENLQVRDEMYSRRKTVVKITSDTTCSLCNKKIGTSVFAVYPNGKTIVHFVCFKDSQSIKAVA KGSALRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	0	1
AT4G02030			Vps51/Vps67 family (components...		Potri.014G120900 [exp]	3.60	0.6999
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	6.00	0.5995
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	13.74	0.6070
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	17.23	0.5644
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	21.93	0.5823
AT3G03570			Protein of unknown function (D...		Potri.013G073200 [exp]	22.44	0.5751
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	26.60	0.6214
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	27.27	0.6212
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.003G183600 [exp]	32.18	0.5624
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	44.89	0.6043	SNT901

Compare expression of checked genes

Potri.005G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.