Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 414 / 5e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 395 / 1e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 267 / 1e-88 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 254 / 7e-84 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 90 / 4e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 78 / 3e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 77 / 4e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 77 / 7e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 74 / 3e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G19650 71 / 1e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025800 [exp] 572 / 0 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 473 / 3e-170 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 437 / 5e-156 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 276 / 1e-91 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 270 / 7e-89 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G168100 [exp] 102 / 8e-26 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 99 / 3e-24 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 95 / 8e-23 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 89 / 1e-20 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014312 [exp] 454 / 9e-163 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 456 / 3e-162 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 413 / 9e-147 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 409 / 5e-145 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 375 / 5e-132 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 264 / 2e-86 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 262 / 2e-86 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 168 / 2e-51 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 111 / 6e-29 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 104 / 4e-26 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.005G123200.2 pacid=42802337 polypeptide=Potri.005G123200.2.p locus=Potri.005G123200 ID=Potri.005G123200.2.v4.1 annot-version=v4.1 ATGTTTCGAAGAAAGCAGTCTCAGAATCATCAGGAGAATGGCATTGAAGAACAAGAAGCGAAGGTCAGTGAACTCAGGGCTGCCCTCGGACCTCTTTCTG GTAGAAGTCTGAAGTACTGCACTGATGCATGCCTGAGGAGATATTTAATAGCACGGAACTGGAATGTTGACAAGGCAAAGAAAATGCTGGAAGAGACACT CAAGTGGAGAGCAACTTACAAGCCTGAAGAAATCTGTTGGCATGAAGTAGCTCATGAAGGTGAGACGGGTAAAGTCTCCAGAGCAGATTTTCATGACCGC TCTGGGAGGACTGTGCTCATATTGAGGCCAGGAAAGCAGAACACAACATGTGCAGAAGACAATATCCGCCATTTGGTTTATCTTATAGAGAACAGTATTC TTAACCTTGCTGACGGTCAAGAACAAATGTCATGGTTGATAGACTTCACTGGATGGGGTTTGAGCGTCAAGGTCCCCATCAAAACTGCTCGTGATTGCAT CAATATCTTACAGAACCACTACCCTGAGAGACTTGCTGTTGCACTTCTTTACAACCCGCCTAGAATTTTTGAAGCTTTTTGGAAGGTCGTCAAGTACTTC CTAGATCCATTAACTTTCCAGAAGGTGAAGTTTGTTTACCCAAAAAAAGAAGATAGTGTGGAGCTCATGAAGTCTTTCTTTGATGTTGATAACCTTCCAA ACGAGTTTGGGGGAAAAGCCACTCTGAATTACGACCATGAGGAGTTCTCAAGACTGATGTCCCAGGATGATGTAAAAACAGCCAAGTTCTGGGGATTAGA TGAAAAGCCAAGCCACATTGCTAACGGTCATTCAGGTGCTCAGGTGGCACCAGAGCCGACACCTCTTGCTCTGCCAGCTTGCTAA
AA sequence Show only first row Show all	>Potri.005G123200.2 pacid=42802337 polypeptide=Potri.005G123200.2.p locus=Potri.005G123200 ID=Potri.005G123200.2.v4.1 annot-version=v4.1 MFRRKQSQNHQENGIEEQEAKVSELRAALGPLSGRSLKYCTDACLRRYLIARNWNVDKAKKMLEETLKWRATYKPEEICWHEVAHEGETGKVSRADFHDR SGRTVLILRPGKQNTTCAEDNIRHLVYLIENSILNLADGQEQMSWLIDFTGWGLSVKVPIKTARDCINILQNHYPERLAVALLYNPPRIFEAFWKVVKYF LDPLTFQKVKFVYPKKEDSVELMKSFFDVDNLPNEFGGKATLNYDHEEFSRLMSQDDVKTAKFWGLDEKPSHIANGHSGAQVAPEPTPLALPAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.005G123200 [exp]	0	1
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	1.73	0.9038
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.002G145251 [exp]	6.24	0.8858
					Potri.006G044300 [exp]	7.34	0.8827
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	7.41	0.8833
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	11.83	0.8811
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.001G190100 [exp]	12.00	0.8838
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	14.96	0.8696
AT5G24660		LSU2	response to low sulfur 2 (.1)		Potri.015G000500 [exp]	17.23	0.8729
AT2G01410			NHL domain-containing protein ...		Potri.006G111600 [exp]	17.66	0.8724
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	19.79	0.8410

Compare expression of checked genes

Potri.005G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.