Plant FIBer expression Database

Potri.005G123900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66760 1136 / 0 SDH1-1 succinate dehydrogenase 1-1 (.1)
AT2G18450 1092 / 0 SDH1-2 succinate dehydrogenase 1-2 (.1)
AT5G14760 232 / 2e-67 AO L-aspartate oxidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G026400
[exp]
1195 / 0 AT5G66760 1180 / 0.0 succinate dehydrogenase 1-1 (.1)
Potri.001G348600
[exp]
233 / 8e-68 AT5G14760 996 / 0.0 L-aspartate oxidase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041739
[exp]
1125 / 0 AT5G66760 1153 / 0.0 succinate dehydrogenase 1-1 (.1)
Lus10024015
[exp]
1068 / 0 AT5G66760 1103 / 0.0 succinate dehydrogenase 1-1 (.1)
Lus10014539
[exp]
233 / 2e-67 AT5G14760 994 / 0.0 L-aspartate oxidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00890 FAD_binding_2 FAD binding domain
CL0063 PF02910 Succ_DH_flav_C Fumarate reductase flavoprotein C-term
Representative CDS sequence
>Potri.005G123900.1 pacid=42803356 polypeptide=Potri.005G123900.1.p locus=Potri.005G123900 ID=Potri.005G123900.1.v4.1 annot-version=v4.1
ATGTGGCGCTGCGTGGCTCGTGGCCTTCGCCTTCCTTCTTCTTCTTCCTCGACGAAGATATTATCTAATGACTCTTTCAGATTTCACAGTACCAGATTTT
TCTCTGCCGATTCTACTGGGGGGGGATCCTCATACACGGTTGTGGATCATACTTATGATGCGGTTGTAGTAGGAGCAGGCGGTGCGGGCTTGAGAGCTGC
TATTGGACTTTCAGAGCATGGATTCAATACAGCTTGCATTACCAAGCTTTTTCCCACTCGATCGCACACTGTTGCGGCTCAGGGTGGTATTAATGCTGCT
CTGGGAAATATGACCGAGGATGATTGGAGATGGCACATGTATGACACTGTCAAGGGAAGTGACTGGTTAGGTGATCAGGATGCCATCCAATACATGTGTA
GGGAGGCACCAAAAGCAGTCATTGAACTTGAGAACTACGGATTACCTTTTTCTCGAACAGAAGATGGAAAAATTTATCAGCGTGCATTTGGGGGTCAAAG
TTTGGATTTTGGGAAAGGTGGGCAGGCATATCGTTGTGCGTGTGCTGCTGACAGAACTGGGCATGCTCTTTTGCATACTCTCTATGGCCAAGCTATGAGA
CACAATACACAATTTTTTGTGGAATATTTTGCTTTGGATCTATTAATGAATAATGATGGTAGCTGCCAAGGAGTGATTGCACTGAATATGGAAGATGGGA
CATTGCATCGCTTCTGTGCTGCTTCAACAATTCTGGCTACAGGGGGATATGGTAGAGCATACTTTTCAGCAACCTCAGCACATACATGCACTGGAGATGG
CAATGCAATGGTTGCCCGGGCCGGGGTTCCACTTGAGGATTTGGAGTTTGTTCAGTTTCATCCTACAGGCATATACGGAGCGGGGTGCCTTATTACAGAA
GGATCTCGTGGTGAAGGTGGTATTCTTAGGAACAGTGAAGGTGAGCGATTTATGGAAAGGTATGCACCTACAGCCAAGGATCTTGCTTCAAGAGATGTCG
TTTCAAGATCCATGACCATGGAAATTCGGGAGGGTCGTGGTGTAGGACCTTTGAAGGACCATATATATCTGCACTTGAATCACTTGCCCCCAGATGTGCT
CAAGGAGAGGCTTCCTGGTATCTCTGAAACTGCTGCCATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCTGTCCTACCGACCGTGCATTATAAT
ATGGGTGGGATTCCCACAAATTACCATGGAGAGGTAGTTACCCTTAAAGGTGACGATCCAGATGCAGTTGTTCCTGGATTAATGGCTGCTGGAGAGGCAG
CCTGTGCTTCAGTTCATGGTGCCAACCGGCTTGGTGCAAATTCTCTTCTTGACATTGTTGTGTTTGGCCGAGCTTGTGCAAATAGAGTAGCCAAAATCCA
TAGACCAGGTGAGAAACAGAAACCTTTGGAAAAGGATGCTGGAGAGAGGACTATTGCATGGCTGGATAAACTAAGAAATTCAAATGGATCACTTTCAACT
TCACACATTCGGTTAAATATGCAGAGGACAATGCAGAACAATGCTGCTGTTTTCCGCACACAAGAAACATTGGAAGAGGGTTGTCACTTGATTGATAAGG
CATGGGAAAGCTTTCATGATGTGAAAGTGAAAGATCGGAGTTTAATATGGAACTCTGACTTAATTGAGACACTGGAGTTGGAAAACCTTTTGATAAATGC
CTGTGTAACTATGCACTCTGCTGAAGCCCGGAAAGAGAGCAGGGGAGCACATGCCCGTGAAGATTTCACCAAAAGAGATGATGAGAACTGGATGAAGCAT
ACTCTGGGATATTGGGAGAATGAGAAGGTCCGACTGGATTACAGGCCAGTTCACATGAACACGTTAGATGATGAGATTGAGCCATTCCCGCCGAAGGCTC
GTGTTTATTGA
AA sequence
>Potri.005G123900.1 pacid=42803356 polypeptide=Potri.005G123900.1.p locus=Potri.005G123900 ID=Potri.005G123900.1.v4.1 annot-version=v4.1
MWRCVARGLRLPSSSSSTKILSNDSFRFHSTRFFSADSTGGGSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAA
LGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMR
HNTQFFVEYFALDLLMNNDGSCQGVIALNMEDGTLHRFCAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGVPLEDLEFVQFHPTGIYGAGCLITE
GSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYN
MGGIPTNYHGEVVTLKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAKIHRPGEKQKPLEKDAGERTIAWLDKLRNSNGSLST
SHIRLNMQRTMQNNAAVFRTQETLEEGCHLIDKAWESFHDVKVKDRSLIWNSDLIETLELENLLINACVTMHSAEARKESRGAHAREDFTKRDDENWMKH
TLGYWENEKVRLDYRPVHMNTLDDEIEPFPPKARVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Potri.005G123900
[exp]
0 1
AT3G62620 sucrose-phosphatase-related (.... Potri.002G198200
[exp]
2.82 0.7681
Potri.003G025032
[exp]
7.14 0.7332
AT1G68750 ATPPC4 phosphoenolpyruvate carboxylas... Potri.008G114200
[exp]
8.83 0.7022
AT1G10600 AMSH2 associated molecule with the S... Potri.010G041200
[exp]
22.13 0.7048
AT3G11620 BAS1 alpha/beta-Hydrolases superfam... Potri.016G072700
[exp]
24.73 0.6821
AT2G14050 MCM9 minichromosome maintenance 9 (... Potri.019G014403
[exp]
28.49 0.6501
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Potri.011G031000
[exp]
30.19 0.6975
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.001G359400
[exp]
31.87 0.7088
AT2G37900 Major facilitator superfamily ... Potri.016G103500
[exp]
34.08 0.6855
AT2G25570 binding (.1.2.3) Potri.001G219400
[exp]
34.78 0.6155

Potri.005G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.