Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 738 / 0 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 352 / 7e-117 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 316 / 2e-102 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G73340 315 / 7e-102 Cytochrome P450 superfamily protein (.1) AT3G13730 306 / 1e-98 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 302 / 1e-97 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G38970 276 / 9e-88 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 276 / 1e-87 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G14400 263 / 1e-83 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT1G55940 253 / 1e-76 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026500 [exp] 861 / 0 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 419 / 2e-143 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 410 / 2e-139 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.010G189800 [exp] 369 / 1e-123 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 366 / 2e-122 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G018400 [exp] 323 / 3e-105 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.017G154600 [exp] 318 / 2e-103 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 317 / 3e-103 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 314 / 8e-102 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024016 [exp] 662 / 0 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10041737 [exp] 489 / 4e-173 AT3G50660 481 / 9e-170 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 392 / 5e-132 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 342 / 3e-113 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10040193 [exp] 343 / 4e-113 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 333 / 4e-109 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 303 / 2e-97 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 302 / 2e-97 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10031295 [exp] 301 / 2e-96 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 296 / 5e-95 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G124000.1 pacid=42805563 polypeptide=Potri.005G124000.1.p locus=Potri.005G124000 ID=Potri.005G124000.1.v4.1 annot-version=v4.1 ATGTCTCACTCAGAGCTTGTTGTGCTTCTCCTTCCTTCAATTTTATCTCTACTCCTGGTCTTCATTCTCATGCAAAGAAAGCAAGCAAGATTTAATCTCC CACCTGGCAACATGGGCTGGCCATTTCTTGGAGAAACTATTGGCTACTTGAAGCCTTACTCTGCTACTTCAATAGGGGAATTCATGGAACAACACATATC AAGGTATGGAAAGATTTACAAGTCCAATTTGTTTGGGGAGCCGACAATAGTATCTGCAGATGCTGGACTTAACAGATTTATACTCCAGAGTGAAGGAAGA TTGTTTGAATGCAGCTATCCAAGAAGTATTGGTGGAATTCTTGGAAAATGGTCTATGCTGGTTCTAGTTGGAGACATGCATAGAAACATGAGGAGTATAT CTCTCAACTTTTTGAGCCATGCCAGGTTAAGAAGTCATCTATTGAAAGAAGTGGAGAAGCAAACCTTGCTTGTTCTTAGTTCTTGGAAGGAGAATTGTAC ATTTTCAGCTCAAGATGAAGCAAAGAAGTTTACCTTCAATTTGATGGCAAAACATATGATGAGCTTGGATCCTGGAAAGCCAGAGACTGAGCAGCTGAAG AAAGAGTATGTTACTTTCATGAAAGGAGTGGTTTCTGCTCCACTAAATTTTCCTGGAACACCGTATAGAAAAGCCTTGAAGTCTCGATCAATCATCCTTA AATTTATAGAGCAAAAAATGGAAGAGAGAATTGCTAGATTGAAGGAGGGAGTGGAAGATTTAGAGGAAGATGATCTTCTTGGATGGGTTTTGAAGCATTC AAATCTTTCTACCGAGCAAATCCTTGACTTGATATTAAGCTTGCTCTTTGCTGGCCATGAAACTTCTTCTGTCTCCATAGCTTTAGCCATCTACTTCTTG CAAGCTTGTCCCGGTGCTATTCAACAGTTAAAAGAAGAACATATTGAAATTTCCAGAGCCAAGAAACAGTCAGGAGAGATGGAAATAAACTGGGATGATT ACAAAAAAATGGAATTCACTCAATGTGTTATAAGTGAGACACTGAGGCTTGGAAACGTAGTCAGGTTCCTTCATAGAAAAGCTGTCAGAGATGTTCGCTA TAAAGGGTATGACATTCCATGTGGATGGAAAGTGCTGCCAGTGATCTCAGCCGTGCATTTAGATTCTACTGTTTTTGACCAGCCTCAACAGTTCAATCCA TGGAGATGGCAGCAGCACAACAATGCTCGTGGATCTTCTACTTGTTCGAGTGCGGCGGCGGCGAGTAGTAATCACTTCATGCCATTTGGGGGAGGACCGC GACTCTGTGCAGGATCGGAATTGGCAAAACTTGAAATGGCAGTTTTCATTCACCATTTGGTTCTGAACTTCCATTGGGAATTGGTCGGTGCCGATCAAGC CTTTGCCTTTCCTTTTGTTGATTTTCCTAAAGGCTTGCCAATAAGAGTCAAGCACCACACAGTCATATAA
AA sequence Show only first row Show all	>Potri.005G124000.1 pacid=42805563 polypeptide=Potri.005G124000.1.p locus=Potri.005G124000 ID=Potri.005G124000.1.v4.1 annot-version=v4.1 MSHSELVVLLLPSILSLLLVFILMQRKQARFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYKSNLFGEPTIVSADAGLNRFILQSEGR LFECSYPRSIGGILGKWSMLVLVGDMHRNMRSISLNFLSHARLRSHLLKEVEKQTLLVLSSWKENCTFSAQDEAKKFTFNLMAKHMMSLDPGKPETEQLK KEYVTFMKGVVSAPLNFPGTPYRKALKSRSIILKFIEQKMEERIARLKEGVEDLEEDDLLGWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFL QACPGAIQQLKEEHIEISRAKKQSGEMEINWDDYKKMEFTQCVISETLRLGNVVRFLHRKAVRDVRYKGYDIPCGWKVLPVISAVHLDSTVFDQPQQFNP WRWQQHNNARGSSTCSSAAAASSNHFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFHWELVGADQAFAFPFVDFPKGLPIRVKHHTVI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.005G237800 [exp]	4.47	0.8456
AT2G46640			unknown protein		Potri.014G102600 [exp]	11.13	0.9002
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	12.24	0.8010
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	13.52	0.8071
AT1G21830			unknown protein		Potri.002G083900 [exp]	14.89	0.8214
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	15.23	0.8324
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	17.43	0.8703
AT3G22640		PAP85	cupin family protein (.1)		Potri.006G002500 [exp]	17.57	0.8707
					Potri.001G021200 [exp]	22.36	0.8710
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G027100 [exp]	22.71	0.7667	AHP1.1

Compare expression of checked genes

Potri.005G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.