Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18460 366 / 8e-129 LCV3 like COV 3 (.1) AT2G20120 338 / 1e-117 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 335 / 6e-117 LCV1 like COV 1 (.1) AT1G43130 301 / 3e-103 LCV2 like COV 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158100 [exp] 352 / 2e-123 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 347 / 3e-121 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.002G065800 [exp] 303 / 3e-104 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 291 / 2e-99 AT1G43130 319 / 2e-110 like COV 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026023 [exp] 376 / 2e-131 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10014314 [exp] 374 / 2e-130 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10011099 [exp] 339 / 6e-118 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10028563 [exp] 316 / 6e-109 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10028564 [exp] 306 / 3e-105 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 306 / 4e-105 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10018868 [exp] 299 / 6e-102 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10043220 [exp] 290 / 4e-100 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [poplar] [flax] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Potri.005G124100.1 pacid=42803715 polypeptide=Potri.005G124100.1.p locus=Potri.005G124100 ID=Potri.005G124100.1.v4.1 annot-version=v4.1 ATGGCAGCGAGAGACAGGGATCTAGAGCGTTTAATACCCATTCAAAATCCAGATATTAATATTAACAATATCATTACCAATGGAGGGTCTAATTCTTCCT CTGAATCTGTCTCTCCTATCATCTCTTCTCATCACTCCTCCAGCGAAGAGGCAATGTCTAAAGTCATCAGAAGCTGGGCTTCGAAGAAGTTCATGTCTGG ATGTGTCATTTTGCTTCCTATGGCCATCACATTCTGCATCACTTGGTGGTTTATTAGTTTTGTGGATGGATTCTTCTCTCCAATCTATGCTCATTTTGGA GTCAATATATTTGGTCTTGGATTTGTGACCTCCATATCTTTCATCTTCCTGATTGGTGTGTTCATGTCCTCATGGTTGGGAGCTTCTGTTCTTGGCTTGG GAGAATGGTTTATCAAGAAAATGCCTTTTGTTAGCTATATTTACTCTGCTTCTAAACAAATCAGTGCAGCAATTTCCCCAGATCAGAGCTCCAACGCCTT CAAGGAAGTGGCCATCATAAGGCATCCACGTCATGGGGAATATGCTTTCGGATTTATCACATCCATTGTTATTCTTCGTGGAAGCATGGGCGCAGAGGAA CTGTGCTGTGTTTATGTGCCTACCAACCACCTTTATCTTGGAGATATTTTCCTCATCAGTTCGAAGGATATTTTGAGACCTAATCTCTCAGTTCGAGAAG GAATCGAAATTGTCATCTCAGGGGGAATGTCAATACCACAGATATTGAACACAATGGATTCACATGCTGTTCATGCAACAGGACTTGGTAAATTCGCAGT GCCACCAGTATAG
AA sequence Show only first row Show all	>Potri.005G124100.1 pacid=42803715 polypeptide=Potri.005G124100.1.p locus=Potri.005G124100 ID=Potri.005G124100.1.v4.1 annot-version=v4.1 MAARDRDLERLIPIQNPDININNIITNGGSNSSSESVSPIISSHHSSSEEAMSKVIRSWASKKFMSGCVILLPMAITFCITWWFISFVDGFFSPIYAHFG VNIFGLGFVTSISFIFLIGVFMSSWLGASVLGLGEWFIKKMPFVSYIYSASKQISAAISPDQSSNAFKEVAIIRHPRHGEYAFGFITSIVILRGSMGAEE LCCVYVPTNHLYLGDIFLISSKDILRPNLSVREGIEIVISGGMSIPQILNTMDSHAVHATGLGKFAVPPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18460		LCV3	like COV 3 (.1)		Potri.005G124100 [exp]	0	1
AT2G16790			P-loop containing nucleoside t...		Potri.019G048200 [exp]	3.87	0.8916
AT5G27830			unknown protein		Potri.005G024200 [exp]	9.79	0.8804
					Potri.006G095100 [exp]	10.90	0.8835
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	13.41	0.8845
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004232 [exp]	18.43	0.8766
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	19.77	0.8554
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.001G146600 [exp]	21.16	0.8003
AT5G44010			unknown protein		Potri.014G192200 [exp]	21.63	0.8803
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	23.91	0.8560
					Potri.004G188432 [exp]	34.17	0.8624

Compare expression of checked genes

Potri.005G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.