Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50670 359 / 2e-120 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT2G43370 93 / 1e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 64 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 57 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 59 / 8e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 56 / 2e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G26420 56 / 2e-08 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT2G27330 53 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 53 / 4e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13570 53 / 1e-07 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026900 [exp] 413 / 2e-140 AT3G50670 322 / 6e-106 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.017G033400 [exp] 92 / 2e-20 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 63 / 1e-11 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 66 / 2e-11 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 60 / 2e-10 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 62 / 3e-10 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 54 / 2e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 55 / 3e-08 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G207100 [exp] 54 / 3e-08 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026026 [exp] 370 / 5e-124 AT3G50670 470 / 4e-164 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10014317 [exp] 367 / 4e-123 AT3G50670 466 / 2e-162 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10025557 [exp] 94 / 6e-21 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027015 [exp] 94 / 7e-21 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027035 [exp] 62 / 4e-10 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 58 / 6e-09 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 57 / 1e-08 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040854 [exp] 52 / 2e-08 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 55 / 6e-08 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10029426 [exp] 55 / 7e-08 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G124300.5 pacid=42804555 polypeptide=Potri.005G124300.5.p locus=Potri.005G124300 ID=Potri.005G124300.5.v4.1 annot-version=v4.1 ATGGGAGACGACAACGATGCCTTCATGCGCAACCAAAACGCCGCTGTACGCGGCACGACGAAAGGACAGAACCGCGCCAACGTTCTCCAGCTCAAACTGA TTGGTCAAAGTCATCCGACGGGATTAACAACAAATCTCTTGAAGCTTTTTGAGCCCCGACTTCCTCTGGAGTTTAAACCCCCGCCGGAGAAGAGAAAATG CCCACCTTATTCAGGAATGGCTCAGTTTGTGAGTAACTTTGCAGAGCCTGGTGATCTGGAGTATGCTCCGCCTATCAAAGAGGCTGAAACTCGTTCACAA AGAAAGGCTAGAATTCACATGGCACGACTAGAGAAGGGTGCAGAAAAAGCTGCAGAGGAGCTCCAAAAATATGATCCTAATAATGATCCAAAAGTTTCAG GAGATCCTTACAAGACACTATTCGTTGCTAGGCTTAATTATGAGACCACCGAGAGTAAAATTAAAAGGGAGCTTGAGTCTTATGGACCAATAAAACAGGT TTGCATGGTAGCTGATAAAGTGTCAAATAAACCTAGGGGCTATGCTTTCATTGAATACATGCATACACGAGACATGAAAGCTGCGTATAAGCAAGCTGAT GGGCGGAAGCTTGATGGCAGAAGGGTACTAGTGGATGTTGAACGGGGTAGGACTGTACCAAATTGGCGACCTCGCAGACTAGGTGGTGGACTTGGAACTA CCAGAGTTGGGGGTGAAGAAGTTAATCAGAGGCATCCTGGGAGAGAGGTTCAGCAATCAGGAGGATTGTCTCGGTCTGAGGAGCCAAGGACACGAGAAGA TCGGCACACTGAACGGGAGAGGGAGGTGTCTCGTGACAGGGGAAGGGACAGGGACAAAGAAAGAGAAAGGGAGAAGTCACATGAGCGCTCCCATGACAGG CCAAGGGATCGTGACCACAGAGAAGATAGGCATAACAGAGATCGTGAAAGAGAGAGAGACCGAGGCCGTGACCGTGATAGAACACGTGATCGAGGTCGGG ACCGTGGCCGTGACTATGAGCGTGATCGAGAGAGAGACCATGGTCGTGATCGTGCTCGGGACAGGGAGAGGGACTATGAAGTCGGTGACCATTACCATGG GCGTTCTCATGATCGGGATGAATCGAAACATGAGAGGGATCGACATGGTGAAAGGGACAATGATCATGCTGAGCCAGAGGATGATATGGGCTGGTATGAA CAACCTGAGCAGGGTCAAAAGCTGCCAGATGCAGAAGATGACCAGCATTATGATCACTACGAGCATCGCAGAAGCAGGGGACGGTATGATCACATGGATG TTCAAGGTGATCATGGCCGCAGTGATCTATATCATGGCACGGATCGCGATGGCGATCATATGGAGGAGGATGATTACCACTATGATCGTGGAACATCTGA GTCACGTGAAAATCGAAGGTTAGAGAGGTCGCCTTCCCAGGATTAG
AA sequence Show only first row Show all	>Potri.005G124300.5 pacid=42804555 polypeptide=Potri.005G124300.5.p locus=Potri.005G124300 ID=Potri.005G124300.5.v4.1 annot-version=v4.1 MGDDNDAFMRNQNAAVRGTTKGQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRLPLEFKPPPEKRKCPPYSGMAQFVSNFAEPGDLEYAPPIKEAETRSQ RKARIHMARLEKGAEKAAEELQKYDPNNDPKVSGDPYKTLFVARLNYETTESKIKRELESYGPIKQVCMVADKVSNKPRGYAFIEYMHTRDMKAAYKQAD GRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHPGREVQQSGGLSRSEEPRTREDRHTEREREVSRDRGRDRDKEREREKSHERSHDR PRDRDHREDRHNRDRERERDRGRDRDRTRDRGRDRGRDYERDRERDHGRDRARDRERDYEVGDHYHGRSHDRDESKHERDRHGERDNDHAEPEDDMGWYE QPEQGQKLPDAEDDQHYDHYEHRRSRGRYDHMDVQGDHGRSDLYHGTDRDGDHMEEDDYHYDRGTSESRENRRLERSPSQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	0	1
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	3.16	0.8271
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	5.19	0.7879	LIG4.1
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	10.53	0.8171
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	10.95	0.8057
AT5G11700			unknown protein		Potri.018G058300 [exp]	11.00	0.7795
AT3G14750			unknown protein		Potri.009G076700 [exp]	12.32	0.7883
AT3G49590		ATG13	autophagy-related 13, Autophag...		Potri.012G004400 [exp]	12.48	0.7493
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	13.19	0.7424
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	14.83	0.7594
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	17.60	0.7867

Compare expression of checked genes

Potri.005G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.