Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 596 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 593 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G18810 537 / 0 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT3G24550 536 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G49270 511 / 1e-174 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G52290 502 / 1e-173 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 458 / 2e-156 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 456 / 6e-153 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 451 / 1e-150 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 437 / 6e-146 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027000 [exp] 788 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 568 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 553 / 0 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 546 / 0 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 491 / 1e-168 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 480 / 3e-164 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 459 / 9e-154 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 451 / 2e-150 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 446 / 1e-148 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024020 [exp] 578 / 0 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 569 / 0 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 564 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 558 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 555 / 0 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10043219 [exp] 549 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 491 / 3e-170 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 491 / 2e-168 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 489 / 2e-166 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10014319 [exp] 465 / 5e-160 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G124400.1 pacid=42803837 polypeptide=Potri.005G124400.1.p locus=Potri.005G124400 ID=Potri.005G124400.1.v4.1 annot-version=v4.1 ATGTCTTCAACCCCTGATGCTCCCTCACCAGATTCTGGCTCCCCTCCTCCTCCACCAGCCTCGTCACCCCCACCTGAGAATTCACCACCCCCACCCCCAC CTCAGTCGGATTCTCCACCACCAGATGCATCATCTCCTCCACCACCTCCACCACCTACTAGTGAATCTCCTCCTCCACCCCCTCCTAAACACAGCAATGC TTCGCCACCTCCTCCACCCAATTCTAGATCACTGTCACCACCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCGAATTCATCAAAT AGTGGAGGTTCTTCGGATCAGATGAAAATTGTTGTTGGGGTGGCGGTTGGTGTTGGGATATTCCTTATTGCCATGATTTTCATATGTGCATATTGTTCGC GCAGGAAGAAGAGAAAAAATATGCATTATTATGGAGAAAATCCTCAAGGAGGAAGTGAACAATTTTCTTATAACAGCCCACAGCAATCAAACTGGCACAA TGGTCTCCCAACAGAACATGGTATGAAGCTATCCCAATCACCAGGTCCAATGGGGTCTGGCTGGCCCGCACCACCTCCACCGATGATGAATAGTAGTGAT ATGAGCTCCAATTACTCTGGTCCATACCGCCCCCCCTTGCCGCCTCCATCACCAAATATTGCTCTTGGGTTCAACAAAAGTACCTTCACATATGATGAGT TAGCAGCAGCTACAAACGGGTTTGATCAAGCTAATCTATTGGGTCAAGGTGGGTTCGGTTATGTGCACAAAGGTGTGTTGCCTAATGGAAAGGATATTGC AGTTAAGAGCTTAAAGTTAGGTAGTGGACAGGGAGAGCGAGAATTCCAGGCTGAAGTTGATATCATTAGTCGTGTCCATCATCGACATCTTGTGTCACTT GTTGGTTATTGTATTGCTGGAGGGCAAAGAATGTTGGTCTATGAGTTTGTTCCCAACAAGACCTTGGAACATCACCTTCATGGAAAGGGTCTTCCAGTCA TGGATTGGCCAACTAGGCTCCGTATTGCATTAGGCTCTGCCAAAGGTCTTGCTTACCTTCATGAAGACTGCCATCCTCGGATTATCCACCGTGATATTAA AGCGGCTAACATCCTCATTGACAATAACTTTGAAGCCATGGTTGCTGATTTCGGACTGGCTAAGCTGTCTTCTGACAATTATACTCATGTATCTACCCGT GTCATGGGTACTTTCGGGTATTTGGCTCCTGAGTATGCATCAAGCGGCAAGCTGACTGATAAATCTGATGTTTTCTCATACGGAGTCATGCTCTTGGAAC TCATAACAGGGAAGAAACCTGTTGATCCTTCAAGTGCAATGGAAGATAGCTTGGTGGACTGGGCTCGACCACTTATGATTACTTCATTGGACACAGGCAA TTACAACGAGTTGGTCGATCCAATGTTGGAGAATAACTACAATCATCAAGAGATGCAAAGAATGATAGCTTGTGCTGCAGCCAGCATTCGTCATTCTGCA AGAAAGCGCCCAAAAATGAGCCAGGTAGCACGTGCATTAGAAGGAGATGTGTTACTGGATGACTTAAATGAGGGTACAAAGCCTGGCCAGAGCTCAGTCT TCTCCGGGTCGAACGGAAGCGCAGACTATGATGCAAGTTCATATAATGCAGATATGAAGAAGTTCAGGCAGGTGGCATTAAATAGTCAAGAGTTTGGAAG CAATGAGCTTGGAACATCAAGCAACGAATCCCCAGTAACAGGCCCTTCAGGGATCCACAGAAATAGCGAGTCTAATTACTAA
AA sequence Show only first row Show all	>Potri.005G124400.1 pacid=42803837 polypeptide=Potri.005G124400.1.p locus=Potri.005G124400 ID=Potri.005G124400.1.v4.1 annot-version=v4.1 MSSTPDAPSPDSGSPPPPPASSPPPENSPPPPPPQSDSPPPDASSPPPPPPPTSESPPPPPPKHSNASPPPPPNSRSLSPPPPPPPPPPPPPPPPPNSSN SGGSSDQMKIVVGVAVGVGIFLIAMIFICAYCSRRKKRKNMHYYGENPQGGSEQFSYNSPQQSNWHNGLPTEHGMKLSQSPGPMGSGWPAPPPPMMNSSD MSSNYSGPYRPPLPPPSPNIALGFNKSTFTYDELAAATNGFDQANLLGQGGFGYVHKGVLPNGKDIAVKSLKLGSGQGEREFQAEVDIISRVHHRHLVSL VGYCIAGGQRMLVYEFVPNKTLEHHLHGKGLPVMDWPTRLRIALGSAKGLAYLHEDCHPRIIHRDIKAANILIDNNFEAMVADFGLAKLSSDNYTHVSTR VMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGKKPVDPSSAMEDSLVDWARPLMITSLDTGNYNELVDPMLENNYNHQEMQRMIACAAASIRHSA RKRPKMSQVARALEGDVLLDDLNEGTKPGQSSVFSGSNGSADYDASSYNADMKKFRQVALNSQEFGSNELGTSSNESPVTGPSGIHRNSESNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.005G124400 [exp]	0	1
					Potri.001G443025 [exp]	8.71	0.7296
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.001G126901 [exp]	13.56	0.6967
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	24.49	0.6626
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	25.49	0.6728
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.011G051300 [exp]	52.64	0.6610
AT1G54215			proline-rich family protein (....		Potri.001G169200 [exp]	53.80	0.6087
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.013G028000 [exp]	169.82	0.6227

Compare expression of checked genes

Potri.005G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.