Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) AT5G07610 74 / 3e-14 F-box family protein (.1) AT5G49610 66 / 1e-11 F-box family protein (.1) AT4G09190 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G44120 57 / 9e-09 F-box and associated interaction domains-containing protein (.1) AT3G08750 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT1G11620 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT3G18910 56 / 3e-08 ETP2 EIN2 targeting protein2 (.1) AT3G22730 52 / 4e-07 F-box and associated interaction domains-containing protein (.1) AT2G07140 52 / 4e-07 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027200 [exp] 634 / 0 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.007G027300 [exp] 226 / 6e-70 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.015G028500 [exp] 100 / 7e-23 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.010G254000 [exp] 89 / 3e-19 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.005G254500 [exp] 76 / 1e-14 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.005G254633 [exp] 72 / 1e-13 AT4G09190 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) Potri.010G149000 [exp] 70 / 5e-13 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.005G043500 [exp] 69 / 1e-12 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.008G038000 [exp] 68 / 3e-12 AT1G64290 175 / 3e-51 F-box protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 341 / 3e-113 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 336 / 1e-111 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10014320 [exp] 217 / 9e-67 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10026028 [exp] 67 / 2e-13 ND 37 / 6e-04 Lus10017086 [exp] 71 / 3e-13 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10015048 [exp] 71 / 4e-13 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10037802 [exp] 66 / 1e-11 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10042989 [exp] 56 / 7e-09 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10037030 [exp] 45 / 0.0001 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036105 [exp] 44 / 0.0002 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G124500.1 pacid=42805290 polypeptide=Potri.005G124500.1.p locus=Potri.005G124500 ID=Potri.005G124500.1.v4.1 annot-version=v4.1 ATGGCTGAGTTGGTGGACAAGCAAATGGAAGAAACAGAAGATGACCCCATCATGCCAGATGAAGTGGATCCATCTGAGGGAAGCTTGCAACAGAACATCA GTATCTCATCTCTCATGTTAATGGATGGGGGTTCAGCGGGTTCACTTGAAATGATTCCAAGTGGTTCAAAGTCCAGTTCTTACAGGAGTTCGGAAAACTG TGCTAAATTTCCTGACCACATAAAGCAGAAGGAGGACATGGAAATTCAAGATGTTGTTAGGCAGTATGCTCTCTGTTTCCTTCCAGCCAAGTCCTTATGC AGGTTCAAGACTGTTTCTAAAGAGTGGCTTAGGTGGATAAACTGTCCCTTTTTTGTCCACACGCAGACAAACCACTTCAGGCATATTTCTGGTCTTTTCT GTCAGTTTCCTGGCGAGAGTCCCTCCTTCATGTCACTCAATCCAGTTGCTTATGGCGTTCCTAACCCCACTCTCTGTTTCTTGCCTGAACCTGTTGACGC AAGAACCTCTTGCAATGGTTTACTTGGCTGCCAAAGCCGCCTTGGAGACAATGCCTACTACATCTGCAACCCTGTGACTGAGGGATGGAGGATGGTTCCA AAGCCAAATTTATATCATGGACCTGAAACAGCCATAGCACTTGCCTTTGAACCTGATATCCTCAACTTTGAAGCGCAATACGAGCTTGTTTGTGCAGTCA CTTTACCTGACCGGACAGCTCTTCAGTTTGAAATATACTCTTCGAGGACAAACTCTTGGAGAGTCTGCAATGCTGTATTCTTGGAGCTGGATGCTCTGCC TCTGAATGGTGATGGTTTCTACACCAGAGGATTTGTCTATTGGGAAACCAAATCAGGTGCAGTTCTGGTTTTCGATTTAAAGGAAGAAGAGTATGGGATT GTCAGTCTCCCACCAAGCAGAAAACCAACTGGTGCTTTGACAGATATGCGGGGGGAGTTATGCTACCTCTTGCCTCACAAAGAAGATGATGCATGGTCAA TTGAGGTCTACGGGAATATGGACATGAGCCTGCAGTGTATAATTCCTCTTCATTCTGAGTTTTTGGGACACCTTGTAGATGGAGAGTGCCGGGCTTTGGC ATTTGTGAATGATGACACACTGATCATTACTCTTGGGACGAAAGTGATTGCTTATCATGCAAGAGCACATAGGATGGAATGGGTAAGTGATGCCAGGACT GATGGTTTTGTGAAGTATTTTCCGTACGTGAACAGCTTTTGCACCTGTGGGCCATTTCATGCATGA
AA sequence Show only first row Show all	>Potri.005G124500.1 pacid=42805290 polypeptide=Potri.005G124500.1.p locus=Potri.005G124500 ID=Potri.005G124500.1.v4.1 annot-version=v4.1 MAELVDKQMEETEDDPIMPDEVDPSEGSLQQNISISSLMLMDGGSAGSLEMIPSGSKSSSYRSSENCAKFPDHIKQKEDMEIQDVVRQYALCFLPAKSLC RFKTVSKEWLRWINCPFFVHTQTNHFRHISGLFCQFPGESPSFMSLNPVAYGVPNPTLCFLPEPVDARTSCNGLLGCQSRLGDNAYYICNPVTEGWRMVP KPNLYHGPETAIALAFEPDILNFEAQYELVCAVTLPDRTALQFEIYSSRTNSWRVCNAVFLELDALPLNGDGFYTRGFVYWETKSGAVLVFDLKEEEYGI VSLPPSRKPTGALTDMRGELCYLLPHKEDDAWSIEVYGNMDMSLQCIIPLHSEFLGHLVDGECRALAFVNDDTLIITLGTKVIAYHARAHRMEWVSDART DGFVKYFPYVNSFCTCGPFHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	0	1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	4.47	0.8863
AT4G10270			Wound-responsive family protei...		Potri.019G117100 [exp]	5.65	0.8259
AT5G16020		GEX3	gamete-expressed 3 (.1)		Potri.004G104500 [exp]	5.91	0.8437
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	6.63	0.8693	Pt-RCOMT1.3
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	7.48	0.7970
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	7.74	0.8328
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	8.36	0.8300
					Potri.008G062950 [exp]	8.71	0.7849
AT5G20810			SAUR-like auxin-responsive pro...		Potri.018G063400 [exp]	9.48	0.8290
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	10.72	0.8051

Compare expression of checked genes

Potri.005G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.