Plant FIBer expression Database

Potri.005G124700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50690 254 / 2e-79 Leucine-rich repeat (LRR) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G027500
[exp]
275 / 1e-87 AT3G50690 242 / 7e-75 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0022 LRR PF14580 LRR_9 Leucine-rich repeat
Representative CDS sequence
>Potri.005G124700.6 pacid=42802619 polypeptide=Potri.005G124700.6.p locus=Potri.005G124700 ID=Potri.005G124700.6.v4.1 annot-version=v4.1
ATGGATGAGATCTGGGAAAGAGCAGTGGAGACAGCATTAGAGGGGCAAACAGATAAGTTAGCGGCAAGAACCCTAACCCTAGACGGTGCGGTTAAGTGTA
TACAAGGAAGATTACCAGCACCAAGTTTATTCGAAAAATTCGTGAATCTTCAACATCTATCTATAGCGAACATTGGTGTTTCAACGTTAGAGCAATTTCC
TCGCCTTGGAAATCTTGAGAAACTAATTTTATCGGATAATAGAATCTCCGGTGGCTTAGAATTTCTTGTAGAAGCTGGACTCGATTCGCTTCGGGATTTA
GATTTGTCCAATAATAGGATTCAGTATATCGAGGATCTAGCTCCTTTGGCCAAGCTAAGGTTGGTTTCGCTTGATTTGTACGAGTGTCCTGTTACGAGAC
TCAAGGATTATCGGTCTAGGGTTTTTGGTTTGATTAGTTCGTTGAAGTATTTGGATAAAATGGATGCTGAGGAGAATGAGAGACCGGAGTCGGATGACGA
GGAGGAAGATGATGATGAAGAGGATGAGGAGGATGACCCAGGGAGTGGTGAGGTTGATGGGGAGGAAAGGCCGTGTATGATGAATAACGGGCACAGTGAA
GTTGGGGAAGGGATTGTTGATGTGGATGAGGAAGAGGAGAGTGAGGCGGATGAGGAGGAGACAGAGACGGGGAGAGAGATTAATGGGGTTAGTCAAAATG
GGTTTCGAGTTGAGGTTGTGGACAGGGATGAGGAAGGGGAGGGGGGGGATGATGATGATGGGGATGAGTCCGGGGAAGAAGAGATTGATGAGGATGATGA
CGAAGATGATGACGAAGATGATGATGTGGTGGAAGTGCATGAGATTGGTGATGATAGTGATGAAAATGATGATGGGGTGGAGTATGAGGAGGAGGATGAT
GATGACGGCGAGGATGGGGAGGGGGAAGAGGATGAGGAGGAGGTGGATAACGATGAAGGGGATCTTGGGGAGCCAGAGAGTACAGGAAGGTTAACGAGTA
CAGAAGGAGAGATTGATGGGCATGAGCAAGGGGAGGATGTTGGTGAGGAGGATGACAATGGGGAGACTGGTGAGGAGGAGCAAGGTGTCGAGGTTGATGG
AGAGTTTGATGATGAGGAAGATGGTGAGGAGGAGGATGAAGACTCCGAGGCAGGGTACTTGGTTCAACCAGTGGGGCAGGCTGAAGTTCTTGAAGCTGGA
GGTATTGATGTGGAGCCAGGGAATGAAGAAGATGATCCTGAAGGGGAGGAAGAAGTTGATGATGACGAAGAGTTGCAGGTGCTACCATCATCCTCACACC
TTAAGAGGAAGAGAGATGAAGACGAGGATGATGATGGTGAGGATGATGATGATGATGTTGTTGAGTATACGACGAAGTCATCGAAGAAGCACCTTTAG
AA sequence
>Potri.005G124700.6 pacid=42802619 polypeptide=Potri.005G124700.6.p locus=Potri.005G124700 ID=Potri.005G124700.6.v4.1 annot-version=v4.1
MDEIWERAVETALEGQTDKLAARTLTLDGAVKCIQGRLPAPSLFEKFVNLQHLSIANIGVSTLEQFPRLGNLEKLILSDNRISGGLEFLVEAGLDSLRDL
DLSNNRIQYIEDLAPLAKLRLVSLDLYECPVTRLKDYRSRVFGLISSLKYLDKMDAEENERPESDDEEEDDDEEDEEDDPGSGEVDGEERPCMMNNGHSE
VGEGIVDVDEEEESEADEEETETGREINGVSQNGFRVEVVDRDEEGEGGDDDDGDESGEEEIDEDDDEDDDEDDDVVEVHEIGDDSDENDDGVEYEEEDD
DDGEDGEGEEDEEEVDNDEGDLGEPESTGRLTSTEGEIDGHEQGEDVGEEDDNGETGEEEQGVEVDGEFDDEEDGEEEDEDSEAGYLVQPVGQAEVLEAG
GIDVEPGNEEDDPEGEEEVDDDEELQVLPSSSHLKRKRDEDEDDDGEDDDDDVVEYTTKSSKKHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.005G124700
[exp]
0 1
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.007G027500
[exp]
2.23 0.8669
AT3G13670 Protein kinase family protein ... Potri.003G215700
[exp]
2.44 0.8083
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
4.47 0.8338
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.004G193500
[exp]
6.32 0.7510
AT4G12610 RAP74, ATRAP74 transcription activators;DNA b... Potri.006G009100
[exp]
6.32 0.7844
AT1G32810 RING/FYVE/PHD zinc finger supe... Potri.011G152600
[exp]
6.48 0.8320
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.002G139700
[exp]
8.36 0.7681
AT2G26280 CID7 CTC-interacting domain 7 (.1) Potri.006G218900
[exp]
11.74 0.7390
AT5G08450 unknown protein Potri.004G135800
[exp]
12.16 0.8146
Potri.004G088000
[exp]
13.74 0.7954

Potri.005G124700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.