Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18510 413 / 2e-144 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 120 / 1e-29 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 114 / 2e-27 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G54080 111 / 3e-27 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 108 / 5e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 104 / 3e-24 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G17370 102 / 3e-24 UBP1B oligouridylate binding protein 1B (.1.2) AT2G23350 103 / 4e-24 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 102 / 9e-24 PAB3 poly(A) binding protein 3 (.1) AT3G19130 93 / 9e-21 ATRBP47B RNA-binding protein 47B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028300 [exp] 482 / 3e-171 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 112 / 4e-27 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 111 / 9e-27 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 108 / 1e-25 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 108 / 1e-25 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 103 / 4e-24 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.006G139300 [exp] 101 / 7e-24 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 100 / 4e-23 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 97 / 2e-22 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041728 [exp] 476 / 3e-169 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 290 / 1e-97 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010370 [exp] 109 / 6e-26 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 109 / 6e-26 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 108 / 9e-26 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 108 / 1e-25 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027641 [exp] 103 / 2e-24 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 103 / 3e-24 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 97 / 4e-22 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10031844 [exp] 93 / 1e-20 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G125300.1 pacid=42803783 polypeptide=Potri.005G125301.1.p locus=Potri.005G125300 ID=Potri.005G125300.1.v4.1 annot-version=v4.1 ATGACAACTCGAATAGCTCCAGGTGTTGGAGCTAATTTACTTGGCCAACACTCATCGGAGAGAAATCAAGATGCCACTGCTTACGTTGGAAATCTCGATC CTCAACTCTCCGAGGATTTACTTTGGGAATTATTTGTTCAAGCCGGTCCTGTTGTTAATGTCTATGTTCCAAAAGATAGAGTAACAAATCTTCACCAAGG ATATGGATTCGTAGAGTTTCGGAGCGAAGAAGATTCTGATTATGCAATTAAGGTTTTGAATATGATTAAGCTTTATGGGAAGCCAATTCGTGTAAACAAG GCGTCGCAAGACAAAAAGAGCTTGGATGTGGGAGCGAATCTCTTTATTGGAAATCTTGACCCTGATGTTGATGAGAAACTTCTGCATGATACTTTCAGTG CATTTGGAGTAATTGTTACAAATCCCAAGATAATGAGAGATCCAGAGACTGGAAATTCCCGCGGTTTTGGTTTCATCACTATCGAGGCAATGAATGGTCA ATATCTTTGCAACCGTCAGATAACAGTCTCATATGCGTACAAGAAAGACGCTAAAGGGGAGCGCCATGGTACTCCAGCAGAGAGAGTTTTGGCTGAAAGC AATCCAACTAACCAAAAGAGCAGGCCCCATACTCTGTTTGCTAGTGGACCTCCAACACTTCCCACTCATGCCAATGGTGCTGTGATGGCACCTGTTCCTC CACGGCCCTTTGCAAATGGCGCCGTTGCTCAAGGACCAGTTCCAGCACTGCACCGACCACCCCCACTAAATGCAGCATTCACACCGATGCAGGTAGCTGG ACAACCAGCTTGGCGGGGTCAGCCACTGCAGCAAGGTCAACCAATGCCTCCACCTCCAGTTCAATTCAGGCCACCTCCTCCAAACATGCCTCGACCTCCT CCACAGGCAGCTCCTATGTTCCCAAGACCTCCCCCACAGCACATGGCAATGGAAGCCCAACCACAAGTTTGGCAACAGCCACCACCACCACAGCATTTTT CTGGGAGGCCCCCTATGCCACAAATGTTGATGCAACCACGTCCTCCACCCAATGCACCACCACCACCACCACCAAGTTGA
AA sequence Show only first row Show all	>Potri.005G125300.1 pacid=42803783 polypeptide=Potri.005G125301.1.p locus=Potri.005G125300 ID=Potri.005G125300.1.v4.1 annot-version=v4.1 MTTRIAPGVGANLLGQHSSERNQDATAYVGNLDPQLSEDLLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDSDYAIKVLNMIKLYGKPIRVNK ASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFITIEAMNGQYLCNRQITVSYAYKKDAKGERHGTPAERVLAES NPTNQKSRPHTLFASGPPTLPTHANGAVMAPVPPRPFANGAVAQGPVPALHRPPPLNAAFTPMQVAGQPAWRGQPLQQGQPMPPPPVQFRPPPPNMPRPP PQAAPMFPRPPPQHMAMEAQPQVWQQPPPPQHFSGRPPMPQMLMQPRPPPNAPPPPPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	0	1
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	3.46	0.9105
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	6.92	0.8918
AT3G19780			unknown protein		Potri.007G070400 [exp]	10.24	0.8342
AT2G30120			unknown protein		Potri.001G281400 [exp]	13.22	0.8693
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	13.78	0.8778
AT1G62530			Plant protein of unknown funct...		Potri.001G121200 [exp]	16.58	0.8199
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	17.32	0.8756
AT4G13970			zinc ion binding (.1)		Potri.002G140800 [exp]	18.97	0.8333
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	19.18	0.8687
AT5G25070			unknown protein		Potri.002G000800 [exp]	21.79	0.8461

Compare expression of checked genes

Potri.005G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.