Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 435 / 9e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 184 / 5e-54 PPR336 pentatricopeptide repeat 336 (.1) AT1G80150 181 / 4e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 177 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 167 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 162 / 8e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 137 / 9e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07740 115 / 5e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 115 / 5e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028400 [exp] 598 / 0 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 183 / 1e-53 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 181 / 9e-53 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 175 / 1e-50 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 174 / 2e-50 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 170 / 6e-49 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 166 / 5e-47 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G032500 [exp] 164 / 1e-46 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G001100 [exp] 157 / 4e-44 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024025 [exp] 425 / 4e-148 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041727 [exp] 355 / 6e-122 AT4G36680 360 / 8e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 168 / 5e-48 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 163 / 5e-46 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 159 / 8e-45 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 156 / 2e-43 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 152 / 6e-42 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 149 / 2e-41 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 150 / 7e-41 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 141 / 7e-38 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G125400.1 pacid=42804306 polypeptide=Potri.005G125400.1.p locus=Potri.005G125400 ID=Potri.005G125400.1.v4.1 annot-version=v4.1 ATGGCGTCCACTCTCCGCCACTTCTCCACCAACATCACCACCACCCAGAAAATCTCCATCTCCATCTCCAAAGCCAAATCAAAACTCCGCACTGAACACG ACCCAGACAAAGCACTAGCCATCTACTCCGCTGCTTCTAATAACGACTCCTCCCCTGCGGCTTCTCGCTATGCTCAAGACCTCACCGTCCGCCGTCTCGC CACATCCCACCGTTTCACCGACATCGAGTCCTTAATAGAATCCCGCAAAACGGACCCCAAAATCAAACAAGAACCCTTCCTTTCATCATTAATTAGATCG TACGGGGTTGCTGGAATGTTTGATCAGGCCATGAAAACTTATCACCAAATGGACCAATTGGGTACCCCTCGATCTTCTATTTCTTTTAATGCTTTATTAT CTGCTTGCGTTCAATCCAGACTTTATAATAAAGTCCCAGGGCTGTTTGATGAAATTAGTGAGAAATATAGGGTCTTGCCTGATAAGGTCTCGTATGGGAT TTTAGTCAAGTCTTATTGTGAGGATGGGAAACCAGATAAGGCGAATGAGGTACTGAGGGAAATGGAAAAGAAAGGAGTGGAAGTTACGACCGTTGTTTAT ACAACACTTTTGAATTGTTTGTATTCGAAGGGAAAGAATGAGGAGGCGGAGAGATTTTGGCATGCAATGGTCAAAAGAGGGTGTGAGTTGGATGCTGCAG TGTATAATGTGAAGATTAGCAATGCTATGAAACAGGGGCCGGAGAGAGTGAAGGAGTTGATTGAGGACATGGAGAATTCTGCGTTAAAACCCGATACGAT CAGTTATAATTATTTGATCACTAGTTATTGCATGACCGGGATGATGGAGGATGCGAAGAAGGTTTATGAGGGGCTGGAGGGATATGGGTGTAAAGCAAAT GCAGCAACATTTAGAACTTTGGTTTTTCACTTGTGTAAGAATGGAGAATATGAGAAAGGGTATAGGTTATTCAAGGAGAGTGTTAGGGTGCATAGGATTC CGGATTTTAATACATTGAAATATTTGGCGGAGGGGTTGGCGGAGAAGAAGAAGATGAAGGAAGCAAAAGGATTGATTCGAACAATGAAGAAAAAGTTCCC TCCTAATTTACTGAATGCATGGAAGAAAGTGGAGGAAAGTCTTGGTTTGCATTCTACCGAGGAGGACAAGGAAGTTAAGGAGGCCACAGCTTAG
AA sequence Show only first row Show all	>Potri.005G125400.1 pacid=42804306 polypeptide=Potri.005G125400.1.p locus=Potri.005G125400 ID=Potri.005G125400.1.v4.1 annot-version=v4.1 MASTLRHFSTNITTTQKISISISKAKSKLRTEHDPDKALAIYSAASNNDSSPAASRYAQDLTVRRLATSHRFTDIESLIESRKTDPKIKQEPFLSSLIRS YGVAGMFDQAMKTYHQMDQLGTPRSSISFNALLSACVQSRLYNKVPGLFDEISEKYRVLPDKVSYGILVKSYCEDGKPDKANEVLREMEKKGVEVTTVVY TTLLNCLYSKGKNEEAERFWHAMVKRGCELDAAVYNVKISNAMKQGPERVKELIEDMENSALKPDTISYNYLITSYCMTGMMEDAKKVYEGLEGYGCKAN AATFRTLVFHLCKNGEYEKGYRLFKESVRVHRIPDFNTLKYLAEGLAEKKKMKEAKGLIRTMKKKFPPNLLNAWKKVEESLGLHSTEEDKEVKEATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	0	1
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	1.73	0.9348
					Potri.002G246900 [exp]	1.73	0.9227
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	4.69	0.9336
AT3G18240			Ribosomal protein S24/S35, mit...		Potri.015G044100 [exp]	5.65	0.9024
AT5G23070			Thymidine kinase (.1)		Potri.006G015800 [exp]	5.65	0.9118
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	7.74	0.9095
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	9.79	0.8836	Pt-IMP4.2
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	10.48	0.9111
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	14.07	0.8941
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	14.96	0.9086

Compare expression of checked genes

Potri.005G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.