Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66730 429 / 5e-146 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 417 / 4e-142 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G03840 304 / 2e-97 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 298 / 2e-95 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT4G02670 293 / 1e-94 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G45260 291 / 7e-93 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G13810 293 / 8e-93 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G55110 288 / 8e-92 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT5G03150 288 / 5e-91 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT2G02080 288 / 7e-91 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028800 [exp] 685 / 0 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.002G263600 [exp] 385 / 7e-129 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.014G180600 [exp] 372 / 1e-123 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.007G135000 [exp] 310 / 9e-100 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 309 / 1e-99 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 308 / 6e-99 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 307 / 2e-98 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 308 / 3e-98 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.002G048000 [exp] 302 / 4e-97 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041723 [exp] 482 / 2e-166 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10010820 [exp] 306 / 5e-101 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 310 / 3e-99 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 291 / 9e-93 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 291 / 1e-92 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 286 / 9e-90 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 295 / 2e-89 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 281 / 6e-89 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 280 / 2e-88 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10004840 [exp] 281 / 4e-88 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.005G125600.2 pacid=42804855 polypeptide=Potri.005G125600.2.p locus=Potri.005G125600 ID=Potri.005G125600.2.v4.1 annot-version=v4.1 ATGCCTGTTGATTTAGATAATTCCCCAGCTGCTTCTGGTGAAGCTAGTGTCTCTTCCTCTGGTTACCAACCATCACAACAACAAACACCGTCCAAGACGG TTGCTATCGCCAAGAAAAAACGCAACCTCCCTGGAATGCCAGTAGATCCAGAAGCAGAGGTGATAGCCTTATCGCCAAAGACCCTTTTAGCTACAAATCG ATTTGTATGTGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAACTTGCAACTTCATCGACGAGGACATAATCTACCATGGAAATTAAGGCAAAGATCA AGTAACGAAGTGAAAAAGAGAGTTTATGTATGTCCAGAGACAACTTGTGTACACCATGATCCATCAAGAGCTCTTGGCGACCTTACAGGAATAAAGAAGC ATTTTTGCAGAAAACATGGGGAAAAGAAGTGGAAATGCGATAAATGTTCGAAGAAGTATGCTGTTCAGTCTGACTGGAAGGCTCACTCAAAGATTTGTGG TACTAGAGAGTATAAATGTGATTGTGGTACCCTGTTTTCAAGGAGGGATAGCTTTATTACACACAGAGCATTTTGTGATGCATTGGCGGACGAGAGTGCT AGAGCTCAAACTCAGACTCCGAACCCAAACCCAAATCATAATCCGGAATCTGACCCGAAAGTTCAAGTTGATTCTTCTCCACCACCAGCACCACTACCAC CACCAGTGGCCCCAGATTTAGGTCCCGGTCTGAGTCAGGCTCCACTAGGGCTAGCTCAGTCAACTGGGATGACACCATCTCCAGTCTTGGCAATTCAGAG TCCAGAGTTACCAGATAATCCTACACAAATTATAGAAGAAGCACCGGCACGGGCACCTATGCCGGCCACAGTAACTGCTGGGTTCAATGGAAGCTGCAGC AGTAGCACTAGCTCAAGCAGCAATGGCAGCAGCACCAGCAGCGTGTTTGCTAGTTTATTTGCTTCCTCAACTGCTTCAGGAAGCTTGCAGACTCCTCAGA CTCCTGCTTTTACTGATCTAATCCATGCAATGGCCCATCCCGATCGCCCAACAGACCTTGCTCCATCATCTTCAGCTGAACCTATTTCTCTGTGTCTCTC CACTAATCATGGGTCATCAATTTTTGGCACCGCAGGGCAAGAACGTAGGCAATATGCACCACCACCACAACCAGCTATATCCGCTACTGCACTGTTACAG AAAGCTGCTCAAATGGGAGCTGCCGCTACAAATGCATCATTGCTTCGTGGGCTTGGGATTGTGTCATCTTCTCCATCATCTACCCAGCAAGACAATACAC AATGGGGTCATAGGCAAATGGAGCCTGAAAATGCCTCACTTGCTGCAGGGCTTGGACTTGGCCTGCCTTGTGATGGAGGTTCTGGATTGAATGAATTGAT GATGGGAACTCCTTCCATATTTGGGCCGAAGCATGCCACTCTTGATTTTCTTGAACTTGGGATGGCTGCTGGTGGGAACCCTAGTGGTGGTCTATCAGCA CTCATTACATCTATTGGTGGTGGTCTTGATGTGGCTGCAGCAGCAGCTTCTTTTGGAGGTGGAGAGTTTTCTGGCAAAGACATGGGAAGGAGCTGA
AA sequence Show only first row Show all	>Potri.005G125600.2 pacid=42804855 polypeptide=Potri.005G125600.2.p locus=Potri.005G125600 ID=Potri.005G125600.2.v4.1 annot-version=v4.1 MPVDLDNSPAASGEASVSSSGYQPSQQQTPSKTVAIAKKKRNLPGMPVDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRS SNEVKKRVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALADESA RAQTQTPNPNPNHNPESDPKVQVDSSPPPAPLPPPVAPDLGPGLSQAPLGLAQSTGMTPSPVLAIQSPELPDNPTQIIEEAPARAPMPATVTAGFNGSCS SSTSSSSNGSSTSSVFASLFASSTASGSLQTPQTPAFTDLIHAMAHPDRPTDLAPSSSAEPISLCLSTNHGSSIFGTAGQERRQYAPPPQPAISATALLQ KAAQMGAAATNASLLRGLGIVSSSPSSTQQDNTQWGHRQMEPENASLAAGLGLGLPCDGGSGLNELMMGTPSIFGPKHATLDFLELGMAAGGNPSGGLSA LITSIGGGLDVAAAAASFGGGEFSGKDMGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.005G125600 [exp]	0	1
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	2.23	0.8747
AT4G02720			unknown protein		Potri.002G051500 [exp]	4.24	0.8995
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	5.47	0.8790
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	6.32	0.8965
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	7.07	0.8659
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	9.79	0.8668
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	13.41	0.8733
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	14.00	0.8726
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	14.69	0.8580
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	15.71	0.8617

Compare expression of checked genes

Potri.005G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.